Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0408.Seq
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_40386| Best HMM Match : BAR (HMM E-Value=0) 31 1.3
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 30 1.7
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 30 1.7
SB_36488| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40) 29 3.9
SB_54| Best HMM Match : Actin (HMM E-Value=0) 29 3.9
SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036) 29 3.9
SB_15732| Best HMM Match : DltD_N (HMM E-Value=8.6) 28 6.8
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_40359| Best HMM Match : PSCyt3 (HMM E-Value=9.6) 28 6.8
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 28 6.8
SB_19128| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_47094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06) 28 9.0
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 9.0
SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_42361| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 28 9.0
>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +3
Query: 438 IEEKRQRLEEAEKKRQAMLQAMKE 509
+EE+R+RLE EK+RQA QAM+E
Sbjct: 319 LEEERKRLENLEKERQAAQQAMQE 342
>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 178 PKQEGEGDPEFIKRQDQKRSDLDEQLRNTSTNGANSGPRRRMSSNALKRSRPSAR 342
P+++ D R+D KRSD + LR + +N+ PRR S+++ S R
Sbjct: 705 PRRDKRSDSNATPRRD-KRSDSNATLRRDKKSDSNATPRRDEKSDSITSSSHETR 758
>SB_40386| Best HMM Match : BAR (HMM E-Value=0)
Length = 369
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 175 APKQEGEGDPEFIKRQDQKRSDLDEQLRNTSTNGANSGPRRRMS-SNALKRS 327
APKQ E +PE + Q +K + DE+ N T+ + P + S S+ LK S
Sbjct: 256 APKQAPE-EPENVPEQHEKAPESDEEQGNGETSAKGTNPLAKSSDSDKLKPS 306
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 441 EEKRQRLEEAEKKRQAMLQAMKEPARPDPTSPSKRR 548
EE+RQ+ EEA K+R+ L A K P +S +RR
Sbjct: 537 EERRQKREEARKRREEKL-AKKGPTTSTSSSRKRRR 571
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 441 EEKRQRLEEAEKKRQAMLQAMKEPARPDPTSPSKRRA 551
EE+RQ+ EEA K+R+ L A KE ++ SK R+
Sbjct: 1344 EERRQKREEARKRREEKL-AKKESSKSSNKRKSKERS 1379
>SB_36488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 184 QEGEGDPEFIKRQDQKRSDLDEQLRNTSTNGANSGPRRRMSSNALKR 324
++G+ D E+ +Q+ E+LRNT N G R+ + S A ++
Sbjct: 67 RKGQKDSEYELDDEQRARKESEKLRNTQRPACNDGRRQLVCSKAKRK 113
>SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -2
Query: 695 GPSVGVCRRRDPRWSAA*CGWTERFSSPLPAAPWSCCAPAGHC 567
G V C R D A CG T ++S P +CCA A C
Sbjct: 173 GQDVNRCHR-DAAIVAKGCGCTGQYSQTCTQGPGACCATAESC 214
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 208 FIKRQDQKRSDLDEQLRNTSTNGANSGPRRRMSSNALKRSRPSA 339
F KRQ QK S L + + G + G R S + K+ RP +
Sbjct: 2535 FEKRQLQKPSSLQQSKKKDDPAGGSHGKNRSTSFSGEKKKRPKS 2578
>SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40)
Length = 372
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +2
Query: 527 NFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIEGLS----VDKLRQKA 694
N T K E +SN QL+ + K+ ++E KK ++R+K + S V+K + +
Sbjct: 172 NRTAPKTFEK-SMSNLQLKISDKKKTVKEAKKELKALRVKAKESKSESNNKAVEKKKAQV 230
Query: 695 QELWECIVKLE 727
Q L E + KLE
Sbjct: 231 QRLEEQLFKLE 241
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = +1
Query: 187 EGEGDPEFIKRQDQKRSDLDEQLRNTSTNGANSGPRRRMSSNALKRSRPSARFLVP 354
E E DP+ R RS+ NT N AN+GP SSN P+ R P
Sbjct: 984 EIECDPDVAMRLATLRSEAS--FENTLNNQANAGPSEETSSNPKSYLVPAPRKAKP 1037
>SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)
Length = 1014
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 471 EKKRQAMLQAMKEPARPDPTSPSKRRAKTSV*AMPSW 581
+K +++ +EPA P SP+++R K S A+ +W
Sbjct: 886 DKPVDEIVEEPEEPADPSAASPARKRRKRSSFALGAW 922
>SB_15732| Best HMM Match : DltD_N (HMM E-Value=8.6)
Length = 121
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 483 QAMLQAMKEPARPDPTSPSKRRAKTS 560
Q L++M+ P+ P TSP+KRR S
Sbjct: 93 QTSLESMRAPSCPTTTSPAKRRRTPS 118
>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 483 QAMLQAMKEPARPDPTSPSKRRAKTS 560
Q L++M+ P+ P TSP+KRR S
Sbjct: 839 QTSLESMRPPSCPTTTSPAKRRRTPS 864
>SB_40359| Best HMM Match : PSCyt3 (HMM E-Value=9.6)
Length = 121
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 483 QAMLQAMKEPARPDPTSPSKRRAKTS 560
Q L++M+ P+ P TSP+KRR S
Sbjct: 93 QTTLESMRAPSCPTTTSPAKRRRTPS 118
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 569 NAQLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETE 733
N ++E K + QL + K I+ L+ D+L++ QEL E + LETE
Sbjct: 131 NQEMEIQKLRSQLGQVSSSYRESEKKSAEIQTLN-DELQRNIQELTERVATLETE 184
>SB_19128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 483 QAMLQAMKEPARPDPTSPSKRRAKTS 560
Q L++M+ P+ P TSP+KRR S
Sbjct: 93 QTSLESMRAPSCPTTTSPAKRRRTPS 118
>SB_47094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 441 EEKRQRLEEAEKKRQAMLQAMKEPARPDPT 530
EEK+++ EAE R+A +QA E + PT
Sbjct: 49 EEKKRQQAEAEAARRARIQARLEESTKKPT 78
>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
Length = 337
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 372 RGAFLLRHEKPCAWPASL*GV 310
RGA L R+E PC W A L G+
Sbjct: 69 RGAALQRNEPPCMWIAILNGI 89
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 462 EEAEKKRQAMLQAMKEPARPDPTSPSKRRAK 554
EE K +A+ K PA P PT PS+ R++
Sbjct: 1162 EEKTKSTEAVSPKPKRPAPPRPTVPSQGRSE 1192
>SB_53672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 524 PNFTIQKKSENFGLSNAQLERNKTKEQLEEE 616
P T + EN GLSN L ++KTK E+
Sbjct: 498 PTPTSSQTQENIGLSNGTLTQDKTKPGCSED 528
>SB_42361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = +3
Query: 438 IEEKRQRLEEAEKKRQAMLQAMKEPARPDPTSPSKR 545
+E+ ++++EE +K+++A+L K D +PS++
Sbjct: 160 LEDAKKKIEELQKEKEAILLRTKATRTRDRVTPSRQ 195
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 462 EEAEKKRQAMLQAMKEPARPDPTSPSKRRAK 554
EE K +A+ K PA P PT PS+ R++
Sbjct: 938 EEKTKSTEAVSPKPKRPAPPRPTVPSQGRSE 968
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,751,512
Number of Sequences: 59808
Number of extensions: 269992
Number of successful extensions: 1281
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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