Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0408.Seq
(735 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 39 0.003
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 39 0.003
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 35 0.069
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 35 0.069
AC084161-2|AAK29732.3| 782|Caenorhabditis elegans Hypothetical ... 34 0.091
U80439-2|AAB37639.1| 435|Caenorhabditis elegans Human cln (neur... 33 0.21
AF326786-1|AAK38267.1| 435|Caenorhabditis elegans CLN-3.2 protein. 33 0.21
Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical p... 30 2.0
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 30 2.0
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 30 2.0
Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical p... 29 2.6
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 2.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 2.6
AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical ... 29 2.6
Z77136-1|CAB00880.1| 606|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z71178-8|CAA94882.1| 552|Caenorhabditis elegans Hypothetical pr... 28 7.9
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 28 7.9
U37429-11|AAA79352.1| 312|Caenorhabditis elegans Hypothetical p... 24 9.2
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +2
Query: 521 GPNFTIQKKSENFGLSN-------AQLERNKTKEQLEEEKKISLS-IRIKPLTIEGLSVD 676
G NF IQKK E+ G+ + A+ E TKEQ EE K ++++ IR + +
Sbjct: 155 GRNFVIQKKEESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMAGIRKSIAEASTILPN 214
Query: 677 KLRQKAQELWECIVKLETE 733
++ K +EL + I KLE +
Sbjct: 215 DMKAKIKELHQRICKLEAQ 233
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +2
Query: 521 GPNFTIQKKSENFGLSN-------AQLERNKTKEQLEEEKKISLS-IRIKPLTIEGLSVD 676
G NF IQKK E+ G+ + A+ E TKEQ EE K ++++ IR + +
Sbjct: 155 GRNFVIQKKEESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMAGIRKSIAEASTILPN 214
Query: 677 KLRQKAQELWECIVKLETE 733
++ K +EL + I KLE +
Sbjct: 215 DMKAKIKELHQRICKLEAQ 233
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 34.7 bits (76), Expect = 0.069
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Frame = +2
Query: 521 GPNFTIQKKSEN---FGLSNAQLERNK---TKEQLEEEKKISLSIRIKPLTIEGLSVDKL 682
G NFT+ K + FG + AQ + K +KEQ+E+ K+ L+ + + GL + L
Sbjct: 174 GRNFTVASKGDQAAQFG-NLAQAKGGKDVMSKEQMEDAKRNFLAAVCRVQDVSGLLPNDL 232
Query: 683 RQKAQELWECIVKLETE 733
+++ + L IVKLE E
Sbjct: 233 KERIRGLHARIVKLEAE 249
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 34.7 bits (76), Expect = 0.069
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Frame = +2
Query: 521 GPNFTIQKKSEN---FGLSNAQLERNK---TKEQLEEEKKISLSIRIKPLTIEGLSVDKL 682
G NFT+ K + FG + AQ + K +KEQ+E+ K+ L+ + + GL + L
Sbjct: 174 GRNFTVASKGDQAAQFG-NLAQAKGGKDVMSKEQMEDAKRNFLAAVCRVQDVSGLLPNDL 232
Query: 683 RQKAQELWECIVKLETE 733
+++ + L IVKLE E
Sbjct: 233 KERIRGLHARIVKLEAE 249
>AC084161-2|AAK29732.3| 782|Caenorhabditis elegans Hypothetical
protein Y92H12A.4 protein.
Length = 782
Score = 34.3 bits (75), Expect = 0.091
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +2
Query: 503 ERASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIE-GLSVDK 679
E+ S P+F+ +K S + + ++E+ K K+ +EE+++ L++ IK L E G + K
Sbjct: 520 EQKSTEKPSFSTEKLSSD--SATTKIEKEKLKKAIEEQEEQELNVLIKQLQGEIGTKIAK 577
Query: 680 LRQKAQE 700
L+ + +E
Sbjct: 578 LKDQWKE 584
>U80439-2|AAB37639.1| 435|Caenorhabditis elegans Human cln
(neuronal ceroid lipofuscinosis)related protein 3.2
protein.
Length = 435
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 205 EFIKRQDQKRSDLDEQ-----LRNTSTNGANSGPRRRMSSNALKRSRPSARFLVP 354
+FI D +R +++E+ +R N + RRR +S L+R P +F++P
Sbjct: 224 DFIPADDMRREEVEEEEGLLGIREDRENSVDVTSRRRQTSTTLERVLPLLKFMIP 278
>AF326786-1|AAK38267.1| 435|Caenorhabditis elegans CLN-3.2 protein.
Length = 435
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 205 EFIKRQDQKRSDLDEQ-----LRNTSTNGANSGPRRRMSSNALKRSRPSARFLVP 354
+FI D +R +++E+ +R N + RRR +S L+R P +F++P
Sbjct: 224 DFIPADDMRREEVEEEEGLLGIREDRENSVDVTSRRRQTSTTLERVLPLLKFMIP 278
>Z14092-10|CAA78472.2| 1020|Caenorhabditis elegans Hypothetical
protein R107.6 protein.
Length = 1020
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 599 EQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVK 721
E+ +E K SL +++ EGL D+L +L C++K
Sbjct: 920 EEKAQEPKASLVLKMMTRLFEGLQADELSPVVDDLAPCVIK 960
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 485 GYAPGHERASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIE- 661
G+A G + K+ F L + RN+ + ++ E +K SLS +I L E
Sbjct: 431 GHASGVPEEKYEAVKMELDSKNREFELLKDSIARNEIRAKMIENEKNSLSTKISDLEREL 490
Query: 662 GLSVDKLRQKA 694
+ DKLR A
Sbjct: 491 KDNKDKLRHGA 501
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 485 GYAPGHERASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIE- 661
G+A G + K+ F L + RN+ + ++ E +K SLS +I L E
Sbjct: 431 GHASGVPEEKYEAVKMELDSKNREFELLKDSIARNEIRAKMIENEKNSLSTKISDLEREL 490
Query: 662 GLSVDKLRQKA 694
+ DKLR A
Sbjct: 491 KDNKDKLRHGA 501
>Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical
protein Y43F4B.3 protein.
Length = 714
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 187 EGEGDPEFIKRQDQKRSDLDE-QLRNTSTNGANSGPRRRMSSN 312
+ EGD +D+K+ ++ L + STNGA G +RR S +
Sbjct: 21 DDEGDIRAAYTEDEKKENIPPISLTSVSTNGAYPGQKRRRSES 63
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/77 (20%), Positives = 42/77 (54%)
Frame = +2
Query: 503 ERASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKL 682
E ASK ++ + ++ A+++ K +++LEE++++ K E L +++
Sbjct: 13518 EAASKKAAAEKLELEKQSHIKKAAEVDAVKKQKELEEKQRLESEAATKKADAEKLKLEEQ 13577
Query: 683 RQKAQELWECIVKLETE 733
++KA E+ +++++ E
Sbjct: 13578 KKKAAEI--ALIEIQKE 13592
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/77 (20%), Positives = 42/77 (54%)
Frame = +2
Query: 503 ERASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKL 682
E ASK ++ + ++ A+++ K +++LEE++++ K E L +++
Sbjct: 13518 EAASKKAAAEKLELEKQSHIKKAAEVDAVKKQKELEEKQRLESEAATKKADAEKLKLEEQ 13577
Query: 683 RQKAQELWECIVKLETE 733
++KA E+ +++++ E
Sbjct: 13578 KKKAAEI--ALIEIQKE 13592
>AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical
protein Y43F4B.3 protein.
Length = 714
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 187 EGEGDPEFIKRQDQKRSDLDE-QLRNTSTNGANSGPRRRMSSN 312
+ EGD +D+K+ ++ L + STNGA G +RR S +
Sbjct: 21 DDEGDIRAAYTEDEKKENIPPISLTSVSTNGAYPGQKRRRSES 63
>Z77136-1|CAB00880.1| 606|Caenorhabditis elegans Hypothetical
protein ZC376.1 protein.
Length = 606
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 500 HERASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIR 640
H + +GP+ +I++ + F + LE K + +L+ EKKI + +R
Sbjct: 504 HLKGVASGPDKSIEQFEKVFNERESFLEELKLRRKLKLEKKIGVQMR 550
>Z71178-8|CAA94882.1| 552|Caenorhabditis elegans Hypothetical
protein B0024.10 protein.
Length = 552
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 563 LSNAQLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWE 709
LS+ +L + K Q E E+K +L + L E D+L + QE ++
Sbjct: 146 LSDQELATMQAKLQEENERKKALDVNFVKLKAENAERDRLERLRQEAFD 194
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 435 DIEEKRQRLEEAEKKRQAMLQAMKEPARPDPTSPSKRRAK 554
DIE+ RQ ++ +K+ + + ++E R + + RRA+
Sbjct: 641 DIEKARQEIKSGDKEDRKRFKLLREQRRQEKLAKKNRRAE 680
>U37429-11|AAA79352.1| 312|Caenorhabditis elegans Hypothetical
protein F09E5.12 protein.
Length = 312
Score = 23.8 bits (49), Expect(2) = 9.2
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +1
Query: 172 PAPKQEGEGDPEFIKRQDQKRSDLDEQLRNTSTNGANSGPRRRMSSNALKRSRPS 336
PAP Q D E ++ +K D E ++ +N+G M S + P+
Sbjct: 160 PAPAQRENEDDEDVEIDVEKDDDEPEDPDGRNSVSSNAGSDNSMRSPSFSPPSPA 214
Score = 22.2 bits (45), Expect(2) = 9.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +1
Query: 10 PHSNVAVLPVQEPVPS 57
PH N+ +PV P P+
Sbjct: 148 PHQNLQNMPVPRPAPA 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,091,944
Number of Sequences: 27780
Number of extensions: 187416
Number of successful extensions: 958
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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