Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0408.Seq
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35890.1 68417.m05097 La domain-containing protein contains P...    32   0.34 
At2g41300.1 68415.m05100 strictosidine synthase family protein s...    30   1.4  
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    30   1.8  
At3g07780.1 68416.m00949 expressed protein                             29   4.2  
At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata format...    28   5.6  
At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata format...    28   5.6  
At5g13800.2 68418.m01610 hydrolase, alpha/beta fold family prote...    28   7.4  
At5g13800.1 68418.m01609 hydrolase, alpha/beta fold family prote...    28   7.4  
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ...    28   7.4  
At5g52280.1 68418.m06488 protein transport protein-related low s...    27   9.8  

>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
           PF05383: La domain
          Length = 523

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = +1

Query: 172 PAPKQEGEGDPEFIKRQDQKRSDLDEQLRNTSTNGANSGPRRRMSSNALKRSRPSAR 342
           PAPKQ G  +P       ++RS       + S NG  S P  + S   L    PS R
Sbjct: 182 PAPKQAGRANPNPTPNHSRQRSFKQRNGASGSANGTVSQPSAQGSFTELPSHNPSPR 238


>At2g41300.1 68415.m05100 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]; contains strictosidine synthase
           domain PF03088; protein alignments support a CG
           non-consensus donor splice site.
          Length = 394

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 707 PRVPGPSVGVCRRRDPRWSAA*CGWTE-RFSSP 612
           PR  GP VGV   R  +WS    GW E  +SSP
Sbjct: 86  PRGEGPYVGVTDGRILKWSGEDLGWIEFAYSSP 118


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 482 PGYAPGHERASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 616
           PGYAP HE  + +G +F   K +    +S ++   +K+ E+L  E
Sbjct: 475 PGYAPTHEGDNSSGWSFPTSKGNIYISISASKPYLHKSHEELRWE 519


>At3g07780.1 68416.m00949 expressed protein
          Length = 566

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +2

Query: 563 LSNAQLERNKTKEQLEEEKKISLSIRIKPLTIE--GLSVDKLRQKAQELWECIVKLETE 733
           ++  Q+ER K K+Q+EE ++I   +R+K    E   L  ++ + +A+ L E IVK + E
Sbjct: 434 VAELQMERQKKKQQIEEVERI---VRLKQAEAEMFQLKANEAKVEAERL-ERIVKAKKE 488


>At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata formation
           protein, putative nearly identical to SHEPHERD
           [Arabidopsis thaliana] GI:19570872; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF00183: Hsp90
           protein
          Length = 823

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 724 EFDDALPEFLGLLSEFVDGETL 659
           EFD+ LP++L  L   VD +TL
Sbjct: 428 EFDELLPKYLSFLKGLVDSDTL 449


>At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata formation
           protein, putative nearly identical to SHEPHERD
           [Arabidopsis thaliana] GI:19570872; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF00183: Hsp90
           protein
          Length = 823

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 724 EFDDALPEFLGLLSEFVDGETL 659
           EFD+ LP++L  L   VD +TL
Sbjct: 428 EFDELLPKYLSFLKGLVDSDTL 449


>At5g13800.2 68418.m01610 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 484

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 635 WTERFSSPLPAAPWSCCAPAGHC 567
           W ++    +P AP+   +PAGHC
Sbjct: 372 WGKKIKKEIPNAPYYEISPAGHC 394


>At5g13800.1 68418.m01609 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 484

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 635 WTERFSSPLPAAPWSCCAPAGHC 567
           W ++    +P AP+   +PAGHC
Sbjct: 372 WGKKIKKEIPNAPYYEISPAGHC 394


>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain; ESTs gb|T44428 and gb|AA395440 come from this
           gene
          Length = 1218

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 581 ERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLE 727
           E     ++ EE+ K S ++  K LTIE  +   +++K  EL++ IVK E
Sbjct: 656 ELESLAKKYEEKYKKSGNVGSK-LTIEEATFRDIQEKKMELYQAIVKFE 703


>At5g52280.1 68418.m06488 protein transport protein-related low
           similarity to  SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 853

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/56 (26%), Positives = 33/56 (58%)
 Frame = +2

Query: 527 NFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKA 694
           N T+++  E    ++ ++ + K + +  EEK  +LS++++ L  E L + KLR ++
Sbjct: 619 NKTLEEMQEK---THTEITQEKEQRKHVEEKNKALSMKVQMLESEVLKLTKLRDES 671


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,259
Number of Sequences: 28952
Number of extensions: 177724
Number of successful extensions: 812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)