Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0406.Seq
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces po...    44   3e-05
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.3  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   5.4  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   7.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   7.2  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   9.5  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   9.5  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    25   9.5  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   9.5  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.5  

>SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
 Frame = +3

Query: 261 AMGGNMTFQEALKKRLDIIRP-NVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVS 437
           AM G + FQE+L++R+ +++  +V  I + I K  +  TPG  +L   L + G  + + S
Sbjct: 113 AMNGEIDFQESLRRRVSLLQGLSVDVINKVIGK--ITFTPGAKQLCHCLKQMGATLVVAS 170

Query: 438 GGFRSLIEPVAERLNI----PTINIFANDSSFIS 527
           GGF  + E V  +L++      +  F++D  F++
Sbjct: 171 GGFVPMAEYVKGQLDLDYAYANVLEFSDDGKFLT 204



 Score = 34.7 bits (76), Expect = 0.012
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +1

Query: 160 VCFDVDSTVIQDEGIDELAKFCGKGDEVKRLT 255
           V FD+DST+IQ E IDELA   G   EV  +T
Sbjct: 79  VVFDMDSTLIQQECIDELAAEAGIQKEVATIT 110


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/80 (23%), Positives = 37/80 (46%)
 Frame = +3

Query: 282 FQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIE 461
           F+E L++      PN+ + + FIE    +LT  I   ++ +H R             L +
Sbjct: 124 FRETLEESSS--NPNISRKQSFIEYLIAKLTDNIQIYIERIHLR------FEDNLSDLEK 175

Query: 462 PVAERLNIPTINIFANDSSF 521
           P +  L + ++ + + D+SF
Sbjct: 176 PYSLGLTLYSLRVTSTDASF 195


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = -1

Query: 272 TAHCFRVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNS 135
           T+  + ++  +S+P   + +SSS PSS  +  S+S ++ S+  ++S
Sbjct: 141 TSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSS 186


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 445 NPPETRYTMTPLSCNSFTNSVIPGVSLTGNFS 350
           +P ET  TMT  +C+S     I  VS T   S
Sbjct: 566 SPEETTTTMTTTTCSSRPEETISTVSTTSTVS 597


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 220 TWPVHRCLHLV*RSSLHRSKRSPLS*TTPGQSVEATSR 107
           TW + R  H     SL  S  SP     PGQ VE + +
Sbjct: 267 TWGILRAFHYTDSLSLDDSYLSPKFEVAPGQIVELSPK 304


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 254 VSLLTS-SPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNS 135
           +++ TS S FP  + SSS   S ++   T+   QS+ L++S
Sbjct: 527 ITISTSLSSFPTTIVSSSFQYSSLSSNVTTTNAQSSSLSSS 567


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 336 IREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANDS 515
           + EF+  F   LTP  ++L K+L  R   V L+        E + E   +   +   +D 
Sbjct: 569 MEEFVSSFSHELTPFASQLAKQL--RNTFVKLMQ-------ETMDESTTVDDFDSLVDDK 619

Query: 516 SF--ISMVNTLVSM 551
           S   I ++NTL +M
Sbjct: 620 SIAAIGILNTLSTM 633


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 245 LTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSW 132
           L  + FP   AS S+P   M  E TS++T S    N +
Sbjct: 144 LARAAFPDQEASISIPWYIMVSECTSEETISFFKENDF 181


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 645 SPTITRRWYPCSSFSRLTTKP 583
           SP I  ++Y C   S L TKP
Sbjct: 155 SPAIFAKYYSCCEISPLLTKP 175


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 312 CPVSSSTLPGMSYYRPLLPRQSF 244
           CP  S  +   +Y  PLLP+QSF
Sbjct: 314 CP--SDIISSFTYENPLLPKQSF 334


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 418 TPLSCNSFTNSVIPGVSLTGNFSMNSLI*PTLGLMMSSLFFN 293
           TP S +SF+  ++P +  T NF+  SLI P L      L +N
Sbjct: 613 TPNSISSFSEVLLPNLISTLNFAPLSLI-PLLRKSFLPLSYN 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,043
Number of Sequences: 5004
Number of extensions: 50231
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)