Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0406.Seq
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0452 - 19188601-19188726,19189364-19189417,19189493-191896... 95 4e-20
11_06_0457 - 23800451-23800576,23801259-23801312,23801390-238015... 88 5e-18
06_01_0817 - 6185881-6187074 30 1.4
03_02_0139 - 5844107-5844278,5844413-5844521,5844630-5844732,584... 30 1.8
03_06_0421 - 33797836-33797992,33798450-33798549,33798646-337987... 29 2.4
01_05_0314 - 20779862-20780286,20780734-20781286 29 2.4
01_06_0794 + 32050413-32050523,32050663-32051391 29 4.2
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210... 28 5.6
01_06_0768 - 31829753-31829851,31830454-31830593,31830729-318308... 28 5.6
03_02_0178 + 6195402-6199158,6199438-6200003 28 7.4
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 27 9.8
02_02_0109 + 6830802-6833412,6833491-6833861 27 9.8
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535... 27 9.8
>12_02_0452 -
19188601-19188726,19189364-19189417,19189493-19189642,
19189994-19190087,19190607-19190710
Length = 175
Score = 95.1 bits (226), Expect = 4e-20
Identities = 45/86 (52%), Positives = 62/86 (72%)
Frame = +3
Query: 264 MGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGG 443
M G++ F++AL RL + +P++GQ+ + +EK P R++PGI ELVK L + V VYLVSGG
Sbjct: 1 MTGSVPFEKALAARLSLFKPSLGQVEDCMEKRPPRISPGIAELVKMLKAKNVDVYLVSGG 60
Query: 444 FRSLIEPVAERLNIPTINIFANDSSF 521
FR +I+PVA +L IP NIFAN F
Sbjct: 61 FRQMIKPVAMQLGIPPENIFANQLLF 86
Score = 58.0 bits (134), Expect = 6e-09
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +2
Query: 509 RLKFYFNGEYAGFDENEPTSRSGGKGLVVRRLKELHGYQRLVIVGDG 649
+L F +GEY GFD +EPTSRSGGK + V+ +++ GY+ L +VGDG
Sbjct: 83 QLLFGTSGEYVGFDPSEPTSRSGGKAVAVQNIRQKCGYRTLFMVGDG 129
>11_06_0457 -
23800451-23800576,23801259-23801312,23801390-23801539,
23801919-23802012,23802460-23802567,23802661-23802793,
23802903-23803139,23803488-23803586,23804968-23804983
Length = 338
Score = 88.2 bits (209), Expect = 5e-18
Identities = 42/89 (47%), Positives = 59/89 (66%)
Frame = +3
Query: 255 AEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLV 434
A+AM G + F+EAL RL +I+P + Q+ + + K P R++PGI +L+K+L V+LV
Sbjct: 161 AKAMTGTVPFEEALAARLSLIKPYLSQVDDCLVKRPPRISPGIADLIKKLKANNTDVFLV 220
Query: 435 SGGFRSLIEPVAERLNIPTINIFANDSSF 521
SGGFR +I+PVA L IP NI AN F
Sbjct: 221 SGGFRQMIKPVASELGIPPENIIANQLLF 249
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = +2
Query: 509 RLKFYFNGEYAGFDENEPTSRSGGKGLVVRRLKELHGYQRLVIVGDG 649
+L F +GEYAGFD EPTSRSGGK L V+++++ HGY+ LV++GDG
Sbjct: 246 QLLFGTSGEYAGFDPTEPTSRSGGKALAVQQIRQNHGYKTLVMIGDG 292
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/48 (60%), Positives = 31/48 (64%)
Frame = +1
Query: 118 PQQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTRK 261
P + V E + AD VCFDVDSTV DEGIDELA FCG G V T K
Sbjct: 115 PSKGVLETWCNADAVCFDVDSTVCLDEGIDELADFCGAGKAVAEWTAK 162
>06_01_0817 - 6185881-6187074
Length = 397
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 615 CSSFSRLTTKPLPPDLDVGSFSSKPAYSPLK 523
C S TT P+PP S S PAY P++
Sbjct: 31 CRSCGAPTTTPVPPPWSASSDSPPPAYRPIR 61
>03_02_0139 -
5844107-5844278,5844413-5844521,5844630-5844732,
5844834-5844865,5845211-5845434,5845774-5845889,
5845997-5846252,5846720-5846807,5846891-5846962,
5847096-5847171,5847302-5847360,5848202-5848268,
5848760-5848825,5850466-5850657
Length = 543
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +3
Query: 423 VYLVSGGFRSLIEPVAERLNIPTINIFAN---DSS--FISMVNTLV-SMKTSQHRDLVAK 584
+Y+V G RSL+ V ER N P + I N DS+ FIS+ + L S + H D +
Sbjct: 422 LYIVPRGMRSLMNYVKERYNSPPVYITENGMDDSNNPFISIKDALKDSKRIKYHNDYLTN 481
Query: 585 V 587
+
Sbjct: 482 L 482
>03_06_0421 -
33797836-33797992,33798450-33798549,33798646-33798700,
33798965-33799085,33799759-33799856,33800004-33800105,
33800196-33800360,33800441-33800522,33800960-33801117,
33801214-33801339,33801533-33801616,33802011-33802100,
33802188-33802258,33803420-33803513,33803585-33803671,
33804258-33804306,33805450-33805538,33805691-33805756,
33806009-33806071,33806174-33806282,33806376-33806446,
33807212-33807298,33807390-33807535,33808848-33808953,
33809429-33809494,33809672-33809741,33810839-33811206
Length = 959
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 88 LSLVSISVMSPQQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKR 249
+ ++S+ + +P+ T+QEL F T++ ++GI E K G+G V R
Sbjct: 268 VDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYK-TGRGRVVMR 320
>01_05_0314 - 20779862-20780286,20780734-20781286
Length = 325
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -3
Query: 213 QFIDAFILYDGRVYIEANAVRCPEQLLDSLLRRHHADRHQ*ERLQRRVLQVA 58
+++D F+ R E ++L D L ++HH +H R+ +L +A
Sbjct: 195 EYVDNFLFQSLREKDEEEVRIAMQRLQDDLQKKHHGSQHSVRRIAHELLGIA 246
>01_06_0794 + 32050413-32050523,32050663-32051391
Length = 279
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = -1
Query: 284 ECHITAHCFRVSLLTSSPFPQN---LASSSMPSSC 189
ECH+ HC +SS FP L S+P+ C
Sbjct: 202 ECHVAFHCRATGWRSSSEFPVRSTALDGGSLPADC 236
>06_03_0706 +
23719392-23719641,23720337-23720383,23720988-23721060,
23721323-23721540,23721868-23722170,23722322-23722399,
23723064-23723549,23723875-23724312
Length = 630
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 239 SSPFPQNLASSSMPSSCMTVESTSKQTQSA-VLNNS 135
SSP +N + SMPSS T ES S T +A VL+ S
Sbjct: 498 SSPKIENSGTKSMPSSQHTSESDSATTSAAQVLDKS 533
>01_06_0768 -
31829753-31829851,31830454-31830593,31830729-31830818,
31830905-31831059,31831598-31831663,31831862-31831931,
31832299-31832429,31832516-31832702,31832828-31832894
Length = 334
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 375 PGITELVKELHERGVIVYLVSGGFRSLIE 461
PG+ LVK LH GV + L S R I+
Sbjct: 93 PGVERLVKHLHRNGVPLALASNSVRRNID 121
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 222 LRERRRG*KTDAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKE 401
LRE DA+ G + QEALKKR D+ + + + + V + G+ + +K+
Sbjct: 1009 LREAISDIIADADKRGQVVALQEALKKRSDLNSEMLQRCPRVLLEILVAIRTGLPDFMKK 1068
Query: 402 LHERG 416
+ G
Sbjct: 1069 SNSIG 1073
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 493 IVGMFSLSATGSIRLLNPPETRYTMTPLSCNSFTNSVIPGVSL 365
I G + TG +R NP + +SCN + V+P + L
Sbjct: 146 IPGEIRFAGTGDLRFFNPSSHDTLILLISCNKTGHLVLPPIFL 188
>02_02_0109 + 6830802-6833412,6833491-6833861
Length = 993
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 405 HERGVIVYLVSGGFRSLIEPVAERLNIPTINIFAND 512
H++ +YL + GF IEP LN+ I++ +N+
Sbjct: 266 HKKLQNLYLYANGFTGEIEPNVSALNLVEIDVSSNE 301
>01_07_0375 -
43152161-43152262,43152556-43152664,43153433-43153504,
43153690-43153834,43153930-43154085,43154557-43154618,
43154695-43155020
Length = 323
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 305 SLLQRFLECHITAHCFRVSLLTSSPFPQNLASSSMPSSCMTVEST 171
S+ FL H T+ F LL + P N +SSS P+S + V S+
Sbjct: 24 SIHTAFLHSHATS--FGTLLLLNPTLPPNSSSSSCPNSFLLVGSS 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,769,994
Number of Sequences: 37544
Number of extensions: 342421
Number of successful extensions: 1090
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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