Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0406.Seq
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95) 58 8e-09
SB_27497| Best HMM Match : Death (HMM E-Value=0.028) 36 0.038
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018) 29 3.3
SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_26507| Best HMM Match : Ala_racemase_N (HMM E-Value=0.39) 28 7.6
>SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95)
Length = 209
Score = 57.6 bits (133), Expect = 8e-09
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +1
Query: 139 LFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEV 243
++++AD VCFDVDSTV+ E IDELA FCG+G+EV
Sbjct: 12 IWKSADAVCFDVDSTVVTGEAIDELASFCGRGEEV 46
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 402 LHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANDSSFIS 527
L G VYLVSGGF+S++EP+A+ L IP N+FAN F S
Sbjct: 62 LLSHGTQVYLVSGGFQSILEPIAKDLGIPKTNVFANKILFNS 103
>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
Length = 892
Score = 35.5 bits (78), Expect = 0.038
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +3
Query: 321 PNVGQIREFIEKFPVRLTPGITEL-VKELHERGVIVYLVSGGFRSLIEPVAERLNIPTIN 497
P VG++RE I + +L + ++ L V+ L+ GF S+ P AER+
Sbjct: 342 PQVGKLRENIHEIAQKLLQVREPIPIRWLQFEKVVASLIEKGFNSIKLPEAERIAEEVCQ 401
Query: 498 IFANDSSFISMVNTLVSMKTSQH 566
I N+ F++++N L +K H
Sbjct: 402 I-DNEREFLTLLNYLHDLKVIIH 423
>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 65 CSTRR*RRSHWCRSA*CRLNRLSRSCSGQRTA 160
C RR R CR + C + RLSRSC +R A
Sbjct: 176 CCVRRLTRCCVCRLSRCCVRRLSRSCCVRRLA 207
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 273 NMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTP--GITELVKELHERGVIVYLVSGGF 446
+++F+E K L+ +R I ++ RLT I ELVK H RG+ ++ F
Sbjct: 928 SLSFEELKKSVLESLRQEPAPIPPEVQHGWWRLTEPSNIKELVKACHSRGIREKMLQKNF 987
Query: 447 RSLIEPVAERLNIP 488
+ E ++ P
Sbjct: 988 QKYSEYISSSCKKP 1001
>SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018)
Length = 349
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 138 LLDSLLRRHHADRHQ*ERLQRRVL 67
+ DS ADRH+ ER+QRRVL
Sbjct: 53 MYDSKAAERRADRHRQERIQRRVL 76
>SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 993
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 362 WKFLNEFSDLTDVRPDDVQSLLQRFLE 282
WK + EF + ++R D+ LL RF+E
Sbjct: 615 WKAMAEFPGVVEIRSRDIVPLLLRFIE 641
>SB_24674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +3
Query: 432 VSGGFRSLIEPVAERLNIPTINIFANDSSFIS-MVNTLVSMKTSQH 566
+ GG R+L+E + + L+ + + AND FI+ +V+TL S S+H
Sbjct: 96 IVGGIRALMELLRDALSQDSASYGANDVKFIAHLVSTLAS-SYSEH 140
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 360 PVRLTPGITELVKELHERGVIVYLVSGGFRSLIEP 464
P RLTP + E V L GV+ + R L+EP
Sbjct: 3146 PFRLTPNMAEFVTPLGVSGVMSASMVAAARCLVEP 3180
>SB_26507| Best HMM Match : Ala_racemase_N (HMM E-Value=0.39)
Length = 195
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = -1
Query: 353 LNEFSDLTDVRPDDVQSLLQRFLECHITA--HCFRVSLLTSSP-FPQNLASSSMPSSCMT 183
L + +++ + RP+++Q L+ R + T C + F +N S +P+ M
Sbjct: 18 LQKINEVAEKRPENLQKLVPRLVAVSKTKPIECIIEAYNNGQRHFGENYVS--VPNLYM- 74
Query: 182 VESTSKQTQSAVLNNSW 132
VE+ + +A LNNSW
Sbjct: 75 VETVDSEKLAATLNNSW 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,110,236
Number of Sequences: 59808
Number of extensions: 384219
Number of successful extensions: 1533
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -