Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0406.Seq
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132865-10|CAB60607.2| 279|Caenorhabditis elegans Hypothetical... 89 3e-18
AL132865-9|CAB60608.2| 276|Caenorhabditis elegans Hypothetical ... 89 3e-18
AL132865-18|CAJ76950.1| 282|Caenorhabditis elegans Hypothetical... 83 1e-16
AL132865-11|CAC42380.2| 265|Caenorhabditis elegans Hypothetical... 83 1e-16
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 31 0.54
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 30 1.6
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 30 1.6
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 29 3.8
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 29 3.8
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 29 3.8
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 29 3.8
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 28 6.6
Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical pr... 27 8.7
AL132860-22|CAB60520.1| 282|Caenorhabditis elegans Hypothetical... 27 8.7
AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical... 27 8.7
>AL132865-10|CAB60607.2| 279|Caenorhabditis elegans Hypothetical
protein Y62E10A.13b protein.
Length = 279
Score = 88.6 bits (210), Expect = 3e-18
Identities = 45/87 (51%), Positives = 56/87 (64%)
Frame = +3
Query: 261 AMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSG 440
AM GN F++AL RL +++PN Q+ +F+ +LT GI ELV LH RG VYLVSG
Sbjct: 93 AMNGNARFRDALAARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRLHARGTHVYLVSG 152
Query: 441 GFRSLIEPVAERLNIPTINIFANDSSF 521
GFR LI PVAE L I I+AN+ F
Sbjct: 153 GFRRLILPVAELLGIEKSRIYANEILF 179
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = +1
Query: 121 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTR 258
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +TR
Sbjct: 46 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTR 91
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Frame = +2
Query: 530 GEYAGFDENEPTSRSG----GKGLVVRRLKELHGYQRLVIVGDG 649
G+Y GFD +E TS SG GK V+ LK+++ Y+ +V+VGDG
Sbjct: 183 GKYHGFDTSELTSDSGSKETGKPAVIALLKKMYNYKTVVMVGDG 226
>AL132865-9|CAB60608.2| 276|Caenorhabditis elegans Hypothetical
protein Y62E10A.13a protein.
Length = 276
Score = 88.6 bits (210), Expect = 3e-18
Identities = 45/87 (51%), Positives = 56/87 (64%)
Frame = +3
Query: 261 AMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSG 440
AM GN F++AL RL +++PN Q+ +F+ +LT GI ELV LH RG VYLVSG
Sbjct: 90 AMNGNARFRDALAARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRLHARGTHVYLVSG 149
Query: 441 GFRSLIEPVAERLNIPTINIFANDSSF 521
GFR LI PVAE L I I+AN+ F
Sbjct: 150 GFRRLILPVAELLGIEKSRIYANEILF 176
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = +1
Query: 121 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTR 258
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +TR
Sbjct: 43 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTR 88
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Frame = +2
Query: 530 GEYAGFDENEPTSRSG----GKGLVVRRLKELHGYQRLVIVGDG 649
G+Y GFD +E TS SG GK V+ LK+++ Y+ +V+VGDG
Sbjct: 180 GKYHGFDTSELTSDSGSKETGKPAVIALLKKMYNYKTVVMVGDG 223
>AL132865-18|CAJ76950.1| 282|Caenorhabditis elegans Hypothetical
protein Y62E10A.13d protein.
Length = 282
Score = 83.4 bits (197), Expect = 1e-16
Identities = 45/89 (50%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Frame = +3
Query: 261 AMGGNMTFQ--EALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLV 434
AM GN F+ +AL RL +++PN Q+ +F+ +LT GI ELV LH RG VYLV
Sbjct: 94 AMNGNARFRYRDALAARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRLHARGTHVYLV 153
Query: 435 SGGFRSLIEPVAERLNIPTINIFANDSSF 521
SGGFR LI PVAE L I I+AN+ F
Sbjct: 154 SGGFRRLILPVAELLGIEKSRIYANEILF 182
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = +1
Query: 121 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTR 258
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +TR
Sbjct: 47 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTR 92
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Frame = +2
Query: 530 GEYAGFDENEPTSRSG----GKGLVVRRLKELHGYQRLVIVGDG 649
G+Y GFD +E TS SG GK V+ LK+++ Y+ +V+VGDG
Sbjct: 186 GKYHGFDTSELTSDSGSKETGKPAVIALLKKMYNYKTVVMVGDG 229
>AL132865-11|CAC42380.2| 265|Caenorhabditis elegans Hypothetical
protein Y62E10A.13c protein.
Length = 265
Score = 83.4 bits (197), Expect = 1e-16
Identities = 45/89 (50%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Frame = +3
Query: 261 AMGGNMTFQ--EALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLV 434
AM GN F+ +AL RL +++PN Q+ +F+ +LT GI ELV LH RG VYLV
Sbjct: 77 AMNGNARFRYRDALAARLQVMKPNHEQLEQFVNISKPKLTVGIRELVSRLHARGTHVYLV 136
Query: 435 SGGFRSLIEPVAERLNIPTINIFANDSSF 521
SGGFR LI PVAE L I I+AN+ F
Sbjct: 137 SGGFRRLILPVAELLGIEKSRIYANEILF 165
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = +1
Query: 121 QQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTR 258
++ V+ ++R AD VCFDVDSTV QDEGIDELA + G G+ V +TR
Sbjct: 30 EEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAVANVTR 75
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Frame = +2
Query: 530 GEYAGFDENEPTSRSG----GKGLVVRRLKELHGYQRLVIVGDG 649
G+Y GFD +E TS SG GK V+ LK+++ Y+ +V+VGDG
Sbjct: 169 GKYHGFDTSELTSDSGSKETGKPAVIALLKKMYNYKTVVMVGDG 212
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -1
Query: 305 SLLQRFLECHITAHCFRVSLLTSSPFPQNLASSSMPSSCMTVE--STSKQTQS 153
S L R++ECH C R ++ P + + S+P+S T E +TS +T +
Sbjct: 314 SCLPRYVECHRRRRCSRKQRCHTTTQPPSPTTESLPTSTTTYEMNTTSLETST 366
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 156 VRCPEQLLDSLLRRHHADRHQ*ERLQRRVLQVAFQTVQ 43
+R EQ LD RRH + +RRV +V FQ V+
Sbjct: 1832 IRAIEQELDGEQRRHQDTEKNWRKAERRVKEVEFQVVE 1869
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 156 VRCPEQLLDSLLRRHHADRHQ*ERLQRRVLQVAFQTVQ 43
+R EQ LD RRH + +RRV +V FQ V+
Sbjct: 1832 IRAIEQELDGEQRRHQDTEKNWRKAERRVKEVEFQVVE 1869
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = -2
Query: 178 SLHRSKRSPLS*TTPGQSVEAT--SR*STPVRASSTSRTAGCFSNCASAIRIDMIR*LP 8
S+ RS + P+S +TPG++ A +R +TP ++ +RT+ AS+IR +R +P
Sbjct: 409 SVDRSGQPPISASTPGKASRADLFNRLATPKVTATPTRTS--HEGPASSIRKSAVRPVP 465
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = -2
Query: 178 SLHRSKRSPLS*TTPGQSVEAT--SR*STPVRASSTSRTAGCFSNCASAIRIDMIR*LP 8
S+ RS + P+S +TPG++ A +R +TP ++ +RT+ AS+IR +R +P
Sbjct: 409 SVDRSGQPPISASTPGKASRADLFNRLATPKVTATPTRTS--HEGPASSIRKSAVRPVP 465
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = -2
Query: 178 SLHRSKRSPLS*TTPGQSVEAT--SR*STPVRASSTSRTAGCFSNCASAIRIDMIR*LP 8
S+ RS + P+S +TPG++ A +R +TP ++ +RT+ AS+IR +R +P
Sbjct: 409 SVDRSGQPPISASTPGKASRADLFNRLATPKVTATPTRTS--HEGPASSIRKSAVRPVP 465
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = -2
Query: 178 SLHRSKRSPLS*TTPGQSVEAT--SR*STPVRASSTSRTAGCFSNCASAIRIDMIR*LP 8
S+ RS + P+S +TPG++ A +R +TP ++ +RT+ AS+IR +R +P
Sbjct: 409 SVDRSGQPPISASTPGKASRADLFNRLATPKVTATPTRTS--HEGPASSIRKSAVRPVP 465
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 239 SSPFPQNLASSS-MPSSCMTVESTSKQTQSAVLNNS 135
SSP L++SS +PS T +S Q QS V NNS
Sbjct: 831 SSPSSTRLSNSSNIPSCFATPDSPDSQLQSFVSNNS 866
>Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical
protein F56A12.1 protein.
Length = 335
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 309 PVSSSTLPGMSYYRPLLPRQSFNLVSFP 226
P SSS+ G S + P++ QSFNL + P
Sbjct: 284 PSSSSSTNGGSDFLPIITPQSFNLAAAP 311
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 239 SSPFPQNLASSS-MPSSCMTVESTSKQTQSAVLNNS 135
SSP L++SS +PS T +S Q QS V NNS
Sbjct: 831 SSPSSTRLSNSSNIPSCFATPDSPDSQLQSFVSNNS 866
>Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical
protein B0285.1 protein.
Length = 730
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 648 PSPTITRRWYPCSSFSRLTTKPLPPDLDVGSFSSK 544
P P++ + +SFS + P PP D G+ SSK
Sbjct: 232 PPPSVDIHFAATASFSLSSIPPPPPQTDGGASSSK 266
>AL132860-22|CAB60520.1| 282|Caenorhabditis elegans Hypothetical
protein Y56A3A.29a protein.
Length = 282
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 648 PSPTITRRWYPCSSFSRLTTK 586
PSP R+W+ C FS+ T+
Sbjct: 248 PSPLSARKWWGCKCFSKCNTE 268
>AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical
protein Y51H7C.11 protein.
Length = 1058
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 14/66 (21%)
Frame = +3
Query: 264 MGGNMT--FQEALKKRLDIIRPNVGQIRE----FIEKFPV--------RLTPGITELVKE 401
+ N+T + E +KK L I P +GQ+ FIEK PV RL I++L +
Sbjct: 329 LASNLTKNYMERMKKELTICYPLLGQVYAFDPIFIEKLPVFAHYDHVARLHINISQLAEH 388
Query: 402 LHERGV 419
L E G+
Sbjct: 389 LVEFGI 394
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,016,942
Number of Sequences: 27780
Number of extensions: 282645
Number of successful extensions: 1022
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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