Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0406.Seq
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 413 RSHRISSFGRIQKSNRTGR 469
           RSHR  S  R Q SN+  R
Sbjct: 70  RSHRFKSLPRCQLSNKRDR 88


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 147 PEQLLDSLLRRHHADRHQ*ERLQRR 73
           P  L +SLL RH+ D  +   L+ R
Sbjct: 636 PPTLTESLLNRHNEDMEKLMMLKHR 660


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 320 PDDVQSLLQRFLECHI 273
           PD+VQ L +RFL  ++
Sbjct: 393 PDEVQHLARRFLNNYL 408


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 252 QSFNLVSFPAE-LGQFIDAFIL 190
           QS  L+SFP E L + +  FIL
Sbjct: 91  QSITLISFPGELLMRLLKMFIL 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,174
Number of Sequences: 438
Number of extensions: 3948
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)