Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0404.Seq
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411     30   1.3  
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703...    30   1.7  
01_06_0495 - 29779499-29781325                                         29   2.3  
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901...    27   9.2  

>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
          Length = 229

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 423 RPSARSFRFLPFLSRHVRRLSPSSSKSGAP 334
           R SA   R+ PFLSR  +R S  S+ SG P
Sbjct: 191 RRSATDGRYAPFLSRQPQRSSAGSTHSGKP 220


>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
            10470975-10471666,10471912-10472062,10473797-10473864,
            10473964-10474042,10474763-10474765,10476427-10477255
          Length = 1349

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 435  YTCQRPSA-RSFRFLPFLSRHVRRLSPSSSK 346
            Y CQ P   ++FRF+   SRH R+   SS K
Sbjct: 1313 YECQEPGCGQTFRFVSDFSRHKRKTGHSSDK 1343


>01_06_0495 - 29779499-29781325
          Length = 608

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -1

Query: 626 TLPFSILLKHLSGLLSHERIHI*MYLEK*TNRGSAHISPKVPPDAP--CSGALSA 468
           +LP+  L +HL+GLL    +H  +  +  T+R + H+   VP   P  C   +SA
Sbjct: 6   SLPYRHLPQHLAGLLKTRPLHD-LLSDASTSRAARHLFDAVPRPTPALCGTLISA 59


>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
            39490623-39491432,39491738-39493035
          Length = 1205

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 435  YTCQRPS-ARSFRFLPFLSRHVRRLSPSSSK 346
            Y C  P  A++FRF+   SRH R+   S  K
Sbjct: 1169 YVCHEPGCAQTFRFVSDFSRHKRKTGHSVKK 1199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,654,017
Number of Sequences: 37544
Number of extensions: 313392
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)