Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0401.Seq
         (745 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3UB32 Cluster: Thymidylate synthase; n=1; Croceibacter...    33   7.4  
UniRef50_A6PLS4 Cluster: Putative uncharacterized protein precur...    33   9.8  

>UniRef50_A3UB32 Cluster: Thymidylate synthase; n=1; Croceibacter
           atlanticus HTCC2559|Rep: Thymidylate synthase -
           Croceibacter atlanticus HTCC2559
          Length = 119

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 603 GYPTLQTETHYCFTAEIGRVVVPTRADSQDVLHHYKRRKKINISDVKSRT 454
           G+ TL+   HY F   +      T   S+DVL+H+ +RK + I D K  T
Sbjct: 8   GFATLELTEHYSFV-NLKENCNMTLEQSKDVLNHFGKRKYVIIVDRKEET 56


>UniRef50_A6PLS4 Cluster: Putative uncharacterized protein
           precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
           Putative uncharacterized protein precursor - Victivallis
           vadensis ATCC BAA-548
          Length = 219

 Score = 32.7 bits (71), Expect = 9.8
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 646 P*DMSSNDSVFKVQRLPHPSNRNALLLHGRNRQGGGTYP 530
           P +  S D   K+ RLPHPS R  LL+ G   +GG   P
Sbjct: 127 PGEWRSTDGFCKISRLPHPS-RQILLMEGSFLEGGTGAP 164


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 769,606,528
Number of Sequences: 1657284
Number of extensions: 15813900
Number of successful extensions: 32200
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32185
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)