Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0401.Seq
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   6.5  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    26   6.5  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   8.6  

>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 308 FNTTNKPELFFKSKTIWLAIRRTVITIC 225
           F  T K  +F  + + W+ +R T  TIC
Sbjct: 205 FMETTKAWIFTMTTSPWMLVRHTATTIC 232


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 245 RTVITICVGPMYITFEDT*VLFMYVN 168
           RTV+ +CV P  + +E+T     Y N
Sbjct: 360 RTVMIVCVSPSSVHYEETHNTLKYAN 385


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 625 DSVFKVQRLPHPSNRNALLLHGRNR 551
           D  F+   LP+  N   L LHG NR
Sbjct: 190 DDEFEEHILPYTGNSRGLYLHGLNR 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,353
Number of Sequences: 5004
Number of extensions: 66489
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)