Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0401.Seq
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0062 + 440239-440325,441107-441183,441416-441643,441953-44...    32   0.55 
11_01_0384 - 2908789-2908991,2909104-2909464,2909574-2909731,290...    29   2.9  
02_05_0277 - 27390783-27391153,27391229-27391507,27391580-273919...    29   2.9  
07_03_0977 + 23092563-23092643,23092736-23092773,23092861-230930...    29   3.9  
11_02_0044 - 7695794-7695918,7696353-7696542,7696633-7696759,770...    29   5.2  
06_02_0005 + 10502478-10503446                                         28   6.8  

>05_01_0062 +
           440239-440325,441107-441183,441416-441643,441953-442176,
           442250-442398,443102-443279,443348-443428,443523-443669,
           443759-444483
          Length = 631

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 280 FLNPRQFG*QYGELLSQYVLGLCTLPLKTLKYFSC 176
           F+ P  +  +Y EL+  Y  G+C L L T +Y  C
Sbjct: 210 FMAPELYDEEYNELVDIYAFGMCLLELVTFEYPYC 244


>11_01_0384 -
           2908789-2908991,2909104-2909464,2909574-2909731,
           2909877-2910097,2910909-2911139,2911545-2911582,
           2911700-2911804
          Length = 438

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 280 FLNPRQFG*QYGELLSQYVLGLCTLPLKTLK--YFSC 176
           F+ P  FG  Y EL+  Y  G+C L + T +  Y  C
Sbjct: 203 FMAPELFGENYNELVDIYSFGMCMLEMVTCECPYSEC 239


>02_05_0277 -
           27390783-27391153,27391229-27391507,27391580-27391970,
           27392042-27392199,27392755-27392975,27393059-27393286,
           27394231-27394268,27394616-27394693
          Length = 587

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 280 FLNPRQFG*QYGELLSQYVLGLCTLPLKTLK--YFSCT*TYNLF 155
           F+ P  +   Y EL+  Y  G+C L + TL+  Y  CT    +F
Sbjct: 193 FMAPELYDENYDELVDIYSFGMCMLEMFTLEYPYSECTNAAQIF 236


>07_03_0977 +
           23092563-23092643,23092736-23092773,23092861-23093088,
           23093307-23093527,23093640-23093797,23093907-23094339,
           23094442-23095394
          Length = 703

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 280 FLNPRQFG*QYGELLSQYVLGLCTLPLKTLKY 185
           F+ P  +  +Y EL+  Y  G+C L + T +Y
Sbjct: 194 FMAPEVYEEEYNELVDIYSFGMCVLEMVTFEY 225


>11_02_0044 -
           7695794-7695918,7696353-7696542,7696633-7696759,
           7701596-7701824,7702973-7703005,7703191-7703281
          Length = 264

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -1

Query: 706 PTWY*VVTGAHKHLQ*SRHPP*DMSSNDSVFKVQRLPHPSNR 581
           PT Y VVTG  K     + P     SN S  K  R P P++R
Sbjct: 129 PTIYEVVTGTAKKQSKEKTPKTSGKSNKSGTKPSRQPEPNSR 170


>06_02_0005 + 10502478-10503446
          Length = 322

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 585 FEGWGSRCTLKTESLELISQGGWRLYCRCLWAPVTT 692
           +  +G+RCT+  + L  I+ G     CR LW   TT
Sbjct: 129 YVAFGNRCTVSNDQLREIAAGLEASGCRFLWILKTT 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,109,318
Number of Sequences: 37544
Number of extensions: 456229
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)