Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0401.Seq
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2707| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_27678| Best HMM Match : Pkinase (HMM E-Value=0)                     29   4.0  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               28   7.0  
SB_11094| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_2707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = -3

Query: 314 RLFNTTNKPELFFKSKTIWLAIRRTVITICVGPMYI 207
           RLFNTT KP L + ++T W   R TVIT+   P++I
Sbjct: 15  RLFNTTVKPILLYGAET-W---RTTVITMKKIPVFI 46


>SB_27678| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 641

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 280 FLNPRQFG*QYGELLSQYVLGLCTLPLKTLKY 185
           F+ P  +   Y E +  Y  G+C L + TL+Y
Sbjct: 249 FMAPEMYEEHYDESVDTYAFGMCMLEMVTLEY 280


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 585  FEGWGSRCTLKTESLELISQGGWRLYCRCLWAPV--TT*YQVGRELVHTEK 731
            FEG   R ++K ++ E+I     RL CR + +PV     Y+    L+ +EK
Sbjct: 3974 FEGISPRFSVKLKNQEVIEGSTARLECRIVGSPVPEVRWYRDNEPLIESEK 4024


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 613 KVQRLPHPSNRNALLLHGRNRQ 548
           +VQR P P+ RN++ LHG   Q
Sbjct: 29  QVQRRPEPTPRNSIFLHGLRAQ 50


>SB_11094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 210 HYL*RHLSTFHVRKLTTYSRYISINTSIEPNDRCLRR*HP 91
           HYL  +LS   +R  +    YIS+  +I+P+D      HP
Sbjct: 50  HYLYDNLSNRWIRSASQPQPYISLTATIQPDDYTALGFHP 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,732,430
Number of Sequences: 59808
Number of extensions: 506685
Number of successful extensions: 984
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)