Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0401.Seq
         (745 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl...    31   2.2  

>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
           single-stranded nucleicacid binding protein protein.
          Length = 1043

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 25/79 (31%), Positives = 34/79 (43%)
 Frame = +1

Query: 223 THIVITVRRIANQIVLDLKNNSGLFVVLNKRSGRFVH*NPLPLARSPC*SRKNTTA*RTQ 402
           +H    VRR   Q   D+K+     +VLN+     +   P PL    C S  NTT    +
Sbjct: 43  SHETTIVRRSLYQTNADMKSYDFENIVLNENKNTIL---PDPLFVDKCGSTANTTEANEK 99

Query: 403 LPPNSYPHVSTSPSLRDSS 459
            P NS   +S S +   SS
Sbjct: 100 KPANSPFPISISKNFSTSS 118


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,876,759
Number of Sequences: 53049
Number of extensions: 758439
Number of successful extensions: 1546
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)