Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0401.Seq
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 649 PP*DMSSNDSVFKVQRLPHPSNRNALLLHGRNRQGGGTYPCGLTRRPAPLQKTK 488
           PP   S  DS    +     +  NA+LL GR+++     P G    P P QK +
Sbjct: 346 PPPSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPG----PTPAQKAR 395


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 607 QRLPHPSNRNALL-LHGRNRQGGGTYPCGLTR 515
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 607 QRLPHPSNRNALL-LHGRNRQGGGTYPCGLTR 515
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 705 PPGIKWLPEPINIYNKAATHLEI*ALMTQFLKYNGYPTLQ 586
           PPG      PIN+Y KA  +  I + M + L+++ +  LQ
Sbjct: 29  PPGEINSINPINVYTKAYIY-TIKSNMAKTLQFDVHMMLQ 67


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 222 NTYCDNSSPYC*PNCLGFKK 281
           +TY  N    C  NC G+++
Sbjct: 154 STYQSNGEEVCLENCTGYQQ 173


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 26  AESTTGSESRPTEKIRRETQ 85
           A  TTG+ + PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,447
Number of Sequences: 438
Number of extensions: 5080
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)