Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0400X.Seq
         (492 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    22   2.6  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   2.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   4.6  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   4.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.1  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 279 IENGVFDVLVTGDD 320
           I+NGVF+V+ T  D
Sbjct: 39  IDNGVFEVVATSGD 52


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 412 RTDAASGMLYIRASSPNEPEPSYVWTTFSTRSSPVTRTSKT 290
           ++   +  L +  S P +P  S   TT    SSP + TS T
Sbjct: 139 KSSGLTSPLSVSTSPPGKPATS---TTSQNLSSPASSTSST 176


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 409 YGPRPPALCGPW 444
           Y P PP+ C PW
Sbjct: 27  YSP-PPSYCDPW 37


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -2

Query: 473 EQDAAERVAVHGPQSAGGLGPYRCCQRHVVH 381
           EQ AA   A      + G+ PY   Q H  H
Sbjct: 27  EQSAAAAAAYRSFPLSLGMSPYASSQHHHHH 57


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
 Frame = +2

Query: 35  RKSVFAET-YDPEEDD 79
           R S   ET YDP EDD
Sbjct: 160 RHSEIVETVYDPREDD 175


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -2

Query: 344 CVDHLFDAVVSGDQDVENAVLDDVE 270
           C++HLF   + GD  ++  +++ +E
Sbjct: 378 CLEHLFFFKLIGDVPIDTFLMEMLE 402


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,215
Number of Sequences: 336
Number of extensions: 2478
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)