Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0400X.Seq
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 84 7e-17
06_01_1005 - 7810210-7810907,7811005-7811080,7811180-7811368,781... 42 3e-04
01_06_0511 + 29937167-29937264,29937362-29937577,29937938-299380... 38 0.004
04_04_0016 - 22167780-22167873,22167978-22168272,22168380-221684... 38 0.006
05_04_0393 - 20895485-20895645,20895750-20896358,20896541-208966... 36 0.018
06_01_1022 + 7992901-7994676 33 0.12
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 31 0.66
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 30 1.2
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82... 29 1.5
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 29 1.5
05_06_0051 - 25190803-25191216,25191301-25191891,25193248-251933... 29 1.5
03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087... 29 1.5
11_01_0128 - 1043053-1043151,1043238-1043570,1043588-1043707,104... 29 2.7
10_08_0647 - 19576672-19577259 29 2.7
04_04_0769 + 27957562-27957745,27958444-27958511,27958977-279590... 29 2.7
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510... 28 3.5
12_02_0179 - 14952398-14952511,14953333-14953356,14953543-149536... 28 4.7
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 28 4.7
07_03_0889 - 22316945-22317062,22317149-22318794 28 4.7
02_01_0772 - 5755371-5756654,5757808-5757834 28 4.7
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388... 27 6.2
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 27 6.2
03_05_1159 + 30822397-30822862,30823228-30823814 27 8.2
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 83.8 bits (198), Expect = 7e-17
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 5/95 (5%)
Frame = +3
Query: 204 CDVRKEIRARRVRNQTGDDGDNFYVIENGVFDVLVTGDD---RVEKVVHTYEGS--GSFG 368
C R E++A + Q G +G+ FYV+ +G F+VL ++ V KV+H Y SFG
Sbjct: 505 CMQRVEVKAGDIVVQQGGEGECFYVVGSGEFEVLAIQEEDGKEVTKVLHRYTADKLSSFG 564
Query: 369 ELALMYNMPLAASVRSQTAGALWAMDRHTFRRILL 473
ELALMYN PL ASVR+ T G LWA+ R FR IL+
Sbjct: 565 ELALMYNKPLQASVRAVTTGTLWALKREDFRGILM 599
>06_01_1005 -
7810210-7810907,7811005-7811080,7811180-7811368,
7811507-7811728,7811906-7812004,7812112-7812192,
7812384-7812679,7812777-7813116,7813221-7813284,
7813511-7813735,7816958-7817244
Length = 858
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +3
Query: 246 QTGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPLAASVRSQTA 425
+ G D Y + +G + + G+D E+ + E SFGE+A++ N+P +VR
Sbjct: 448 EQGSAVDQLYFVCHGALEGVGIGEDGQEETILMLEPESSFGEIAVLCNIPQPFTVRVCEL 507
Query: 426 GALWAMDRHTFRRIL 470
L +D+ +F IL
Sbjct: 508 CRLLRLDKQSFTNIL 522
>01_06_0511 +
29937167-29937264,29937362-29937577,29937938-29938093,
29939614-29939671,29939768-29940085,29940160-29940399,
29940489-29940587,29940676-29940711,29941183-29941368,
29941442-29941709,29941805-29941911
Length = 593
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 273 YVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPLAASVRSQ 419
Y+I +G +VL T +D EK V G GE+ +M+N+P ++RS+
Sbjct: 388 YIIVSGEVEVLTTLEDGTEKQVMRIGPRGMAGEIGVMFNIPQPFTIRSR 436
>04_04_0016 -
22167780-22167873,22167978-22168272,22168380-22168455,
22168665-22168853,22168955-22169176,22169315-22169413,
22169502-22169582,22169753-22170060,22171611-22171950,
22172047-22172110,22172191-22172412,22172865-22173043
Length = 722
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = +3
Query: 264 DNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPLAASVRSQTAGALWAM 443
D Y++ +G + + G+D E+++ G G++A++ N+P +VR +L +
Sbjct: 421 DQIYIVAHGCLEEVANGEDGSEEIISELRPYGIVGDVAVICNIPQPYTVRVCELCSLLRI 480
Query: 444 DRHTFRRIL 470
D+ + IL
Sbjct: 481 DKQSLTSIL 489
>05_04_0393 -
20895485-20895645,20895750-20896358,20896541-20896616,
20896729-20896920,20897118-20897438,20897880-20898119,
20898205-20898522,20898621-20898678,20898778-20898936,
20900090-20900308,20900400-20900614
Length = 855
Score = 35.9 bits (79), Expect = 0.018
Identities = 18/62 (29%), Positives = 37/62 (59%)
Frame = +3
Query: 237 VRNQTGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPLAASVRS 416
V+N+ DD Y++ +G +V+ + + E+VV T G FGE++ + + P + ++R+
Sbjct: 420 VQNEAPDD---VYIVVSGEVEVIYSDGEAEERVVATLGTRGVFGEVSALSDRPQSFTLRT 476
Query: 417 QT 422
+T
Sbjct: 477 RT 478
>06_01_1022 + 7992901-7994676
Length = 591
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 237 VRNQTGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPLAASVRS 416
+ N+T D Y+I +G + L T D EK V G GE+ +M+++P ++RS
Sbjct: 378 LENETSTD---CYIIISGEVEALTTLADGTEKHVKRIGPRGMAGEIGVMFSIPQPFTIRS 434
Query: 417 Q 419
+
Sbjct: 435 R 435
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 30.7 bits (66), Expect = 0.66
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 2 EEPPVARFNNRRKSVFAETYDPEEDDSDEGAPA 100
E PP RR+ A + P EDD +EG PA
Sbjct: 209 ESPPSPPTRGRRRKRAATSDPPPEDDEEEGTPA 241
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 9 RQWRALTIGANPFSPRLMTPKRMILTKEPLPCSPSRTHREPVSLRRSGAYCC 164
R R+ + G +SPR +PKR ++ P P R P R + CC
Sbjct: 136 RYRRSPSYGRRSYSPRDRSPKRRSYSRSPPPARARSYSRSPPPPRAALFACC 187
>10_01_0062 -
818396-818538,819482-819693,819936-820420,820540-820696,
820787-820924,821127-821703,821978-822018,822679-822809
Length = 627
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 246 QTGDDGDNFYVIENGVFDVLVTGDDRVEKVVHT 344
+ D GD +Y+ + +FD+L D +E VHT
Sbjct: 135 EKADAGDKYYLYRHIIFDILYNKDRVIEINVHT 167
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 249 SDYVLAGLGSLSEHRIQNLLHLC 181
SD + GL + H++QNL+H C
Sbjct: 1452 SDSAILGLQCMQAHKVQNLIHCC 1474
>05_06_0051 -
25190803-25191216,25191301-25191891,25193248-25193317,
25193392-25193443,25195368-25195440,25195557-25195646
Length = 429
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 8 PPVARFNNRRKSVFA---ETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVRGILLFRSLD 178
PP+ R R A E D EE+D DE APA P +RAR + R++
Sbjct: 173 PPLHRNPRHRPRAAAHREEEDDEEEEDDDEDAPASLP-PPPRRARAPPSPARERAARTIQ 231
Query: 179 AH 184
AH
Sbjct: 232 AH 233
>03_05_0407 -
23906388-23906966,23907028-23907915,23908141-23908753,
23908858-23909021
Length = 747
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -2
Query: 398 QRHVVHQGQFAKRTGTFVCVDHLFDAVVSGDQDVENAVLDDVEVV---AVIPCLITYSPG 228
Q+ +H+ +FAK +F V+H+ + D D +++ + E V VIPC S G
Sbjct: 493 QKVTLHEQRFAKARKSFKKVNHVCPYIYKSDDDDDDSEVATAEWVRSKKVIPCQWVKSSG 552
>11_01_0128 -
1043053-1043151,1043238-1043570,1043588-1043707,
1043810-1043993,1044088-1044275,1044714-1044808,
1044884-1045003,1045232-1045350,1052717-1052799,
1052892-1053071
Length = 506
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -1
Query: 255 PLSDYVLAGLGSLSEHRIQNLLHLCASRERNSSMPRTASARRALCAS 115
P + ++ S EH+ ++++H +S ER+S P +A+A AL AS
Sbjct: 109 PTTKSLVTSPKSTDEHKDRSIIHASSSPERSSHDP-SAAANPALSAS 154
>10_08_0647 - 19576672-19577259
Length = 195
Score = 28.7 bits (61), Expect = 2.7
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Frame = +3
Query: 147 SGAYCCSVLLTRTNAAGSGCDVRKEIRARRVRNQTGDDGDN-------FYVIENGVFDVL 305
SGA + L R AAG+ +IRA RV N G G ++ G+ +
Sbjct: 76 SGAVAGAALGLRDAAAGAEPGDTAKIRANRVLNSCGGGGRRLGNRLGVIGLMYAGMESAM 135
Query: 306 VTGDDRVEKVVHTYEGSGSFGELALMYNMPLAASVRSQTAGAL 434
V DR + V G G+ G L N P +A+V G L
Sbjct: 136 VAARDRDDWVNSVAAGLGT-GALFRAANGPRSAAVAGAIGGVL 177
>04_04_0769 +
27957562-27957745,27958444-27958511,27958977-27959058,
27959193-27959239,27959349-27959474,27960439-27960526,
27960922-27961034,27961976-27962038,27962110-27962165,
27962502-27962594,27962991-27963092,27963178-27963226,
27963318-27963386,27963486-27963572
Length = 408
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 181 AQMQQVLDAMFGKRSEPGEYVIRQG 255
+ ++++ DA+ KR EPG YV R+G
Sbjct: 47 SSIRRIADAVLVKRYEPGGYVAREG 71
>10_08_0827 +
20849312-20849833,20850352-20850417,20850786-20851082,
20851215-20851412,20851748-20851849,20851960-20852100,
20852171-20852278,20852588-20852670,20852829-20852991,
20853636-20853650,20853968-20854093
Length = 606
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 436 HRAPAVWDRTDAASGMLY-IRASSPNEPEPSYVWTTFS 326
HR+P VWDR D + + PNE Y + FS
Sbjct: 474 HRSPEVWDRADDFIPERFDLEGPVPNETNTEYRFIPFS 511
>12_02_0179 -
14952398-14952511,14953333-14953356,14953543-14953670,
14953765-14953891,14953930-14954013,14954245-14954397,
14954478-14954579,14955036-14955128,14955289-14955350,
14955395-14955522,14957053-14957291,14958040-14958471,
14958774-14958912,14960564-14960883
Length = 714
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 155 CPGPPQRDGLSVRPTWGTRQGL 90
C P VRPTW +R+GL
Sbjct: 319 CDNNPNNRNYGVRPTWNSRRGL 340
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3
Query: 252 GDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPLAASVRSQTAGA 431
G DG ++ E+ D +EK +Y G + E+ YN P + VRS+T G
Sbjct: 205 GHDGGAMFLPEDCQIDAF-QAVSLIEKTNGSYSSEGRYMEI---YNDPAMSLVRSETTGT 260
Query: 432 L 434
+
Sbjct: 261 V 261
>07_03_0889 - 22316945-22317062,22317149-22318794
Length = 587
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 332 LFDAVVSGDQDVENAVLDDVEVVAVIPCLITYSPGSDLFPNIASR 198
L A+ SGD V AVL + V +++ L SP S +A R
Sbjct: 353 LLAAIASGDSSVREAVLQEGAVESLVSVLDPASPRSSKAREVALR 397
>02_01_0772 - 5755371-5756654,5757808-5757834
Length = 436
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 111 SRTHREPVSLRRSGAYCCSVLLTRTN-AAGSGCDV 212
+R HR P LRR + C V+ R A G GC V
Sbjct: 203 NRWHRAPDMLRRRHGFGCCVMGNRLYVAGGEGCGV 237
>09_04_0515 +
18238434-18238545,18238659-18238709,18238844-18238897,
18239727-18239777,18239845-18239895,18240056-18240210,
18240550-18240663,18240873-18240938,18241478-18241561,
18241640-18241726,18241975-18242066,18242163-18242223,
18242475-18242531,18243129-18243220,18243394-18243584,
18244203-18244321,18244518-18244589,18244699-18244784,
18244866-18244962,18245488-18245622
Length = 608
Score = 27.5 bits (58), Expect = 6.2
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Frame = -3
Query: 427 PAVWDRTDAASGMLYIRASSPNE-PEPSYVWTTFSTRSSPVTRTSKTPFSMT*KLSPSSP 251
P R+ ASG + +P P + T+ R SP ++ + SP P
Sbjct: 27 PGAARRSSGASGRSRVSRVNPGAYPRSAGRGRTWK-RDSPEAPPRRSGITRVPNRSPEMP 85
Query: 250 V*L--RTRRARISFRTSHPEPAAFVRVKRTEQQYA-PDRLSETGS 125
RT+ + ++ SH A VR+ R E+ A D L+E G+
Sbjct: 86 TERAGRTKVSNVNLEVSHHRAVAAVRLLRIEKGKAFVDLLNEKGN 130
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 27.5 bits (58), Expect = 6.2
Identities = 36/115 (31%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Frame = -3
Query: 475 LSRMRRNVWRSMAHRAPAVWDRTDAASGMLYIRASSPNEPE-PSYVWTTFSTRSSPVTRT 299
L R RR V R+ + APA T AAS L SSP P+ WTT +P
Sbjct: 73 LKRRRRPV-RASSSPAPADPMPTPAASSALAPATSSPRPASPPTPPWTT-----APPPGI 126
Query: 298 SKTPFSMT*KLSPSSPV*LRTRR--ARISFRTSHPEPAAFVRVKRTEQQYAPDRL 140
+ P +T S SP TR+ S ++ E R K Q+Y L
Sbjct: 127 AAPPLWIT--FSQQSPTKRGTRKNNKEASPSNTNGEEETIQREKAAPQEYCDTNL 179
>03_05_1159 + 30822397-30822862,30823228-30823814
Length = 350
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +3
Query: 123 REPVSLRRSGAYCCSVLLTRTNAAGSGCDVRKEIRARRVRNQTGDDGDNFYVIEN 287
R+PVS+ +GA R G+GC V T DG +++++N
Sbjct: 262 RQPVSVAINGAGYVFRFYDRGVLGGAGCGTELNHAVTAVGYGTASDGTGYWLMKN 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,869,243
Number of Sequences: 37544
Number of extensions: 338912
Number of successful extensions: 1467
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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