Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0400X.Seq
(492 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39) 81 5e-16
SB_12691| Best HMM Match : cNMP_binding (HMM E-Value=1.7e-26) 61 4e-10
SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 3e-09
SB_52453| Best HMM Match : cNMP_binding (HMM E-Value=1.9e-26) 58 4e-09
SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21) 34 0.055
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.073
SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_49169| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.22
SB_49167| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.39
SB_56249| Best HMM Match : cNMP_binding (HMM E-Value=5.4e-23) 31 0.52
SB_21541| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.90
SB_27554| Best HMM Match : cNMP_binding (HMM E-Value=2.6) 30 1.2
SB_36287| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_11282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07) 29 2.1
SB_44854| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_10829| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 29 2.8
SB_15073| Best HMM Match : MED7 (HMM E-Value=2.1) 29 2.8
SB_5593| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_2796| Best HMM Match : RR_TM4-6 (HMM E-Value=1.9) 29 2.8
SB_33011| Best HMM Match : cNMP_binding (HMM E-Value=0.037) 28 3.6
SB_19362| Best HMM Match : M (HMM E-Value=0.0014) 28 3.6
SB_18428| Best HMM Match : cNMP_binding (HMM E-Value=0.037) 28 3.6
SB_26117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_12667| Best HMM Match : Caudal_act (HMM E-Value=6.7) 28 4.8
SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8) 28 4.8
SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_3203| Best HMM Match : FGF (HMM E-Value=0.013) 28 4.8
SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_58207| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_11281| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27) 27 8.4
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84) 27 8.4
SB_7359| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)
Length = 373
Score = 81.0 bits (191), Expect = 5e-16
Identities = 37/93 (39%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Frame = +3
Query: 216 KEIRARRVRNQTGDDGDNFYVIENGVFDVLVTGDDRVEKV-VHTYEGSGSFGELALMYNM 392
K++ + + GD+GDNFYVI G +DV + + VHT+ G+G FGELALM+N
Sbjct: 142 KKVSPEEIIIKVGDEGDNFYVINTGEYDVFALDTNTGASIKVHTFNGTGMFGELALMHNS 201
Query: 393 PLAASVRSQTAGALWAMDRHTFRRILLKSAFKK 491
A++ ++T G LWA+DR TF ++++ A ++
Sbjct: 202 LRNATIVAKTEGTLWALDRSTFVQVVVGGAQRR 234
Score = 33.5 bits (73), Expect = 0.097
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = +3
Query: 273 YVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPLAASVRSQTAGALWAMDRH 452
Y IE G V V D VEK V FGELAL+ N P +ASV + ++ +
Sbjct: 286 YFIEKGKVRVTVK-DGEVEKTVEF--DKNYFGELALVMNQPRSASVYAVGECKFASLKKD 342
Query: 453 TFRRIL 470
F R++
Sbjct: 343 DFERLM 348
>SB_12691| Best HMM Match : cNMP_binding (HMM E-Value=1.7e-26)
Length = 376
Score = 61.3 bits (142), Expect = 4e-10
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +3
Query: 255 DDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSG-SFGELALMYNMPLAASVRSQTAGA 431
+ G + YV+E G V G V + G G +FGELA++YN ASVR+QT+G
Sbjct: 185 EPGSHLYVLEEGKCQVTKEG------TVLGHMGPGKAFGELAILYNCTRTASVRAQTSGK 238
Query: 432 LWAMDRHTFRRILLKSAFKK 491
LWA+DR TF+ I++K+ +
Sbjct: 239 LWAIDRQTFQTIMMKTGLMR 258
>SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = +2
Query: 5 EPPVARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVRGILLFRSL 175
EPP R+ RR+SV AE + P+ +D + P V+PK+D QR RL +A++ ILLF++L
Sbjct: 92 EPPKNRYA-RRQSVCAEPFHPDSEDEGDEQPIVYPKTDEQRQRLNDAIKNILLFKNL 147
Score = 31.9 bits (69), Expect = 0.30
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +1
Query: 178 RAQMQQVLDAMFGKRSEPGEYVIRQG 255
+ Q+ +VLDAMF ++++ G+++I QG
Sbjct: 149 KEQLNEVLDAMFERKTQAGDHIIDQG 174
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 252 GDDGDNFYVIE 284
GDDGDNFYVI+
Sbjct: 174 GDDGDNFYVID 184
>SB_52453| Best HMM Match : cNMP_binding (HMM E-Value=1.9e-26)
Length = 370
Score = 58.0 bits (134), Expect = 4e-09
Identities = 27/53 (50%), Positives = 38/53 (71%)
Frame = +3
Query: 333 VVHTYEGSGSFGELALMYNMPLAASVRSQTAGALWAMDRHTFRRILLKSAFKK 491
+V T GSFGELAL+Y P AA+++++T LWA+DR T+RRIL+ S +K
Sbjct: 179 LVSTIGEGGSFGELALIYGTPRAATIKAKTDVKLWAIDRVTYRRILMGSQIRK 231
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +3
Query: 252 GDDGDNFYVIENGVFDVLV---TGDDRVEKVVHTYEGSGSFGELALMYNMPLAASVRSQT 422
G+ GD F++I G VL +D +E V S FGE+AL+ N P AA+V+++
Sbjct: 275 GEHGDEFFIIVEGTAVVLQRRSANEDFIE--VSRLGPSDYFGEIALVLNRPRAATVQARG 332
Query: 423 AGALWAMDRHTFRRIL 470
+DR F R+L
Sbjct: 333 TLKCVKLDRQRFERVL 348
>SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)
Length = 858
Score = 34.3 bits (75), Expect = 0.055
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +3
Query: 246 QTGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGS-FGELALM-YNMPLAASVRSQ 419
++G GD Y I+ G+ D+L E + T G GS FGE+ L+ ASVR+
Sbjct: 653 RSGHRGDKMYFIQKGIVDILTR-----EGALATSLGDGSHFGEICLLTKEARRVASVRAA 707
Query: 420 TAGALWAMDRHTFRRIL 470
T ++++ F +L
Sbjct: 708 TTCDVYSLSATHFHEVL 724
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 33.9 bits (74), Expect = 0.073
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 3 KSRQWRALTIGANPFSPRLMTPKRMILTKEPLPCSPSRTHREPVSLRRS 149
KS + RA ++ ++P+ +TPK ++ ++ L PSR P S +R+
Sbjct: 603 KSARTRAWSVSPRLYTPKSITPKFILSPRQTLSAPPSRPKTAPTSAQRT 651
>SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 32 RRKSVFAETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVRGILLFRS 172
RR SV E Y+P + A +PKS+ R RL + I +F+S
Sbjct: 291 RRDSVAGEVYEPVNSNC-VSAQRFYPKSEDARKRLENVIGNIFIFKS 336
>SB_49169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 32.3 bits (70), Expect = 0.22
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +2
Query: 14 VARFNNRRKSVFAETYDPEEDDSDEGAPAVFP--KSDAQRARLAE---AVRGILLFRSLD 178
V R K A+ D E D +EGAPA P K RA L E A +G + D
Sbjct: 114 VDRVKKMHKKKMAKKEDEEMDVPEEGAPAKKPAVKKLGSRAALRECIAAAKGKGCNNTKD 173
Query: 179 AHKCSRFWMRCSER 220
C+R ++ C +R
Sbjct: 174 CRPCARGFVLCMKR 187
>SB_49167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.5 bits (68), Expect = 0.39
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +2
Query: 14 VARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSD--AQRARLAE---AVRGILLFRSLD 178
V R K A+ D E D +EGAPA P + RA L E A +G + D
Sbjct: 114 VDRVKKMHKKKMAKKEDEEMDVPEEGAPAKKPAVEKLGSRAALRECIAAAKGKGCNNTKD 173
Query: 179 AHKCSRFWMRCSER 220
C+R ++ C +R
Sbjct: 174 CRPCARGFVLCMKR 187
>SB_56249| Best HMM Match : cNMP_binding (HMM E-Value=5.4e-23)
Length = 279
Score = 31.1 bits (67), Expect = 0.52
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +3
Query: 252 GDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPLAASVRSQTAGA 431
GD G Y I G ++L + V+ T FGE+ L+Y A+V+++T
Sbjct: 157 GDMGREMYCIRRGQVNILCE-----DNVIGTLGPGSFFGEIGLIYGESRFATVQAKTYCQ 211
Query: 432 LWAMDRHTFRRIL 470
+ + +H +L
Sbjct: 212 ILMLTKHDLDEVL 224
>SB_21541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 30.7 bits (66), Expect = 0.68
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 21 ALTIGANPFSPRLMTPKRMILTKEPLPCSPSRTHREPVSL 140
ALT + PFSP + P + LT P SP++ P SL
Sbjct: 61 ALTAYSRPFSPDSLFPPPLALTAYSRPFSPAKLIARPFSL 100
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 30.3 bits (65), Expect = 0.90
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = +3
Query: 246 QTGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPLAASV 410
Q GD G+ Y I +G V R KV+ FGELA++YN A+V
Sbjct: 515 QEGDAGNALYAIADGRLQVT-----RENKVLGEMVAGMVFGELAILYNCRRTATV 564
>SB_27554| Best HMM Match : cNMP_binding (HMM E-Value=2.6)
Length = 82
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 357 GSFGELALMYNMPLAASVRSQTAGALWAMDRHTFRRIL 470
G FGELAL+ + AASV S ++D H F R+L
Sbjct: 16 GYFGELALITHNTRAASVYSVGDCVCASLDVHAFERLL 53
>SB_36287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 365 KRTGTFVCVDHLFDAVVSGDQDVENAVLDDVE-VVAVIPCLITYSPGSDLFPNIASRTCC 189
K + FVCVDH + V ++ A+L VE V +PC Y G +L TC
Sbjct: 105 KHSSQFVCVDHDAEYVPGSVANLNGALLYPVEGVCGSLPC-APYVDGYEL-------TCV 156
Query: 188 ICAR 177
+C +
Sbjct: 157 VCTK 160
>SB_11282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 330 KVVHTYEGSGSFGELALMYNMPLAASVRSQTAGALWAMDRHTFRRI 467
K++ G SFGELALM+++ A++ + +D+ F +
Sbjct: 234 KIISEMTGGDSFGELALMHDIRRTATIICKERSEFLRVDKDDFNEM 279
>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
Length = 599
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 189 AAGSGCDVRKEIRARRVRNQTGDDGD 266
+AGS D RK +RAR + + T DD +
Sbjct: 416 SAGSDADTRKNLRARSMVSTTSDDSE 441
>SB_44854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 890
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 389 VVHQGQFAKRTGTFVCVDHLFDAVV 315
+VH G RTGTF+ +D L D +V
Sbjct: 489 LVHCGAGVGRTGTFIAIDSLMDQMV 513
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 365 KRTGTFVCVDHLFDAVVSGDQDVENAVLDDVE-VVAVIPC 249
K + FVCVDH + V DV A+L VE +PC
Sbjct: 105 KHSSQFVCVDHDAEYVPGSGADVNGALLYPVEGRCGSLPC 144
>SB_10829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 402 ASVRSQTAGALWAMDRHTFRRILLKSAFKK 491
A++R++ AG +D H F+RIL +FKK
Sbjct: 70 AALRTKGAGGPSNVDAHGFQRILASKSFKK 99
>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 998
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 60 MTPKRMILTKEPLPCSPSRTHRE 128
MTP R LT LPC SRT+ E
Sbjct: 941 MTPSRASLTPTHLPCRDSRTNSE 963
>SB_15073| Best HMM Match : MED7 (HMM E-Value=2.1)
Length = 644
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 402 ASVRSQTAGALWAMDRHTFRRILLKSAFKK 491
A++R++ AG +D H F+RIL +FKK
Sbjct: 369 AALRTKGAGGPSNVDAHGFQRILASKSFKK 398
>SB_5593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 402 ASVRSQTAGALWAMDRHTFRRILLKSAFKK 491
A++R++ AG +D H F+RIL +FKK
Sbjct: 388 AALRTKGAGGPSNVDAHGFQRILASKSFKK 417
>SB_2796| Best HMM Match : RR_TM4-6 (HMM E-Value=1.9)
Length = 224
Score = 28.7 bits (61), Expect = 2.8
Identities = 25/92 (27%), Positives = 31/92 (33%)
Frame = +3
Query: 36 ANPFSPRLMTPKRMILTKEPLPCSPSRTHREPVSLRRSGAYCCSVLLTRTNAAGSGCDVR 215
ANP PR+ KR T RR G CC G G D
Sbjct: 122 ANPHPPRVRKRKRKRPTATTTTTKQGPVCGRGGGGRRGGGGCCG------GGGGGGGDCT 175
Query: 216 KEIRARRVRNQTGDDGDNFYVIENGVFDVLVT 311
+ A+ DD +N Y +E V V +T
Sbjct: 176 CDEEAKEAVVVDNDDSNNSYEVEEKVIVVNMT 207
>SB_33011| Best HMM Match : cNMP_binding (HMM E-Value=0.037)
Length = 210
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 252 GDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGS-FGELALM 383
G+ G Y+I +G +V+V EK+V G+ FGE++L+
Sbjct: 158 GEIGREMYIINHGKVEVVVPDSTTGEKIVVASLTEGNYFGEISLL 202
>SB_19362| Best HMM Match : M (HMM E-Value=0.0014)
Length = 722
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +3
Query: 252 GDDGDNFYVIENGVFDV---LVTGDDRVEKVVHTYEGS 356
G DG+ + IENG DV L+ ++R+ +++ YEG+
Sbjct: 204 GRDGNKYMGIENGKADVSEKLLQENERLRELLRQYEGN 241
>SB_18428| Best HMM Match : cNMP_binding (HMM E-Value=0.037)
Length = 210
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 252 GDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGS-FGELALM 383
G+ G Y+I +G +V+V EK+V G+ FGE++L+
Sbjct: 158 GEIGREMYIINHGKVEVVVPDSTTGEKIVVASLTEGNYFGEISLL 202
>SB_26117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -2
Query: 365 KRTGTFVCVDHLFDAVVSGDQDVENAVLDDVE-VVAVIPCLITYSPGSDLFPNIASRTCC 189
K + FVCVDH + V + E A+L VE +PC Y G +L TC
Sbjct: 97 KHSSQFVCVDHDAEYVPGTSVNREGALLYPVEGKCGSLPC-APYVDGYEL-------TCA 148
Query: 188 ICAR 177
+C +
Sbjct: 149 VCTK 152
>SB_12667| Best HMM Match : Caudal_act (HMM E-Value=6.7)
Length = 198
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -2
Query: 365 KRTGTFVCVDHLFDAVVSGDQDVENAVLDDVE-VVAVIPCLITYSPGSDLFPNIASRTCC 189
K + FVCVDH + V + E A+L VE +PC Y G +L TC
Sbjct: 143 KHSSQFVCVDHDAEYVPGTSVNREGALLYPVEGKCGSLPC-APYVDGYEL-------TCA 194
Query: 188 ICAR 177
+C +
Sbjct: 195 VCTK 198
>SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +2
Query: 83 DEGAPAVFPKSDAQRARLAEAVRGILLFRSLDAHKCSRFWMRCSERDPS 229
DE P V P DA R + I L S + S+FWM+CS+R+ S
Sbjct: 446 DEARP-VLP--DAPRYPPINSGDKIALKMSYTSGDLSKFWMKCSDRECS 491
>SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)
Length = 405
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 11 PVARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSD 118
P + S AE P E DS+EG P + P D
Sbjct: 276 PAEPVEQSQDSGVAEAESPAEQDSEEGTPGMSPPVD 311
>SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +2
Query: 83 DEGAPAVFPKSDAQRARLAEAVRGILLFRSLDAHKCSRFWMRCSERDPS 229
DE P V P DA R + I L S + S+FWM+CS+R+ S
Sbjct: 36 DEARP-VLP--DAPRYPPINSGDKIALKMSYTSGDLSKFWMKCSDRECS 81
>SB_3203| Best HMM Match : FGF (HMM E-Value=0.013)
Length = 423
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -3
Query: 187 FVRVKRTEQQYAPDRLSETGSLCVRLGEHGRGSFVRIILFG--VISLGENGFAPIVKARH 14
++R+ R + Y RL G + +RL HG+ ++R+ G I L +G I RH
Sbjct: 265 YIRLNRHGKMYI--RLDRNGKMYIRLNRHGK-MYIRLNRHGKMYIRLNRHGKMYIRLNRH 321
Query: 13 WRLF 2
+++
Sbjct: 322 GKMY 325
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 187 FVRVKRTEQQYAPDRLSETGSLCVRLGEHGR 95
++R+KR Q Y RL+ G + +RL HG+
Sbjct: 225 YIRLKRHGQMYI--RLNRHGKMYIRLNRHGK 253
>SB_52940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -2
Query: 365 KRTGTFVCVDHLFDAVVSGDQDVENAVLDDVE-VVAVIPCLITYSPGSDLFPNIASRTCC 189
K + FVCVDH + V + E A+L VE +PC Y G +L TC
Sbjct: 117 KHSSQFVCVDHDAEFVPGTSVNREGALLYPVEGRCGSLPC-APYVDGYEL-------TCA 168
Query: 188 ICAR 177
+C +
Sbjct: 169 VCTK 172
>SB_58207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 359 TGTFVCVDHLFDAVVSGDQDVENAVLDDVEVVAVIPCLIT 240
T F+C+ V DQDV AV++ +++A+ +T
Sbjct: 119 TSFFICIGKALQIVPFTDQDVRTAVVNIGQMIAMTSSFMT 158
>SB_11281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +3
Query: 360 SFGELALMYNMPLAASVRSQTAGALWAMDRHTFRRILLKSAFKK 491
SFGELAL++++ A++ + +D+ F + LK+++K+
Sbjct: 223 SFGELALLHDIKRTATIICKGRAEFLRLDKPGFDEV-LKNSYKR 265
>SB_7057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 365 KRTGTFVCVDHLFDAVVSGDQDVENAVLDDVE-VVAVIPC 249
K + FVCVDH + + ++ A+L VE V +PC
Sbjct: 152 KHSSQFVCVDHDAEYIPGSVANLNGALLYPVEGVCGSLPC 191
>SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)
Length = 471
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 213 RKEIRARRVRNQTGDDGDNFYVIENGVFDVLVTGD 317
RK+I R + + D + +++ +FD+L TGD
Sbjct: 363 RKKITRREAKKKCQDSNVTGFYLDSCMFDLLTTGD 397
>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
Length = 1737
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 350 FVCVDHLFDAVVSGDQDVENAVLDDVE 270
F+ +DH D+V S D ENAV ++E
Sbjct: 1115 FINLDHESDSVKSSVADAENAVPSEIE 1141
>SB_7359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 412 RTDAASGMLYIRASSPNEPEPSYVWTTFSTRSSPVTRTSKTPF 284
R +A L I+ SSP + S V +T++T + VT T PF
Sbjct: 99 RGNATIDWLAIQGSSPTMQQGSVVLSTWTTGTQCVTVTLPKPF 141
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,149,800
Number of Sequences: 59808
Number of extensions: 359567
Number of successful extensions: 1444
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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