Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0399.Seq
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.5  
AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    22   3.3  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    22   3.3  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    22   3.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.4  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   4.4  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   4.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   5.8  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 213 WTPTSKGEKPSIRAW 257
           W P+ K  KP ++ W
Sbjct: 575 WHPSDKSAKPMLKPW 589


>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +1

Query: 442 TLRVTTTPAALNAPLQGASGGTFGEMCAEPLFVYFSKYIQ 561
           T  +TT  A L     GA       M   PLF Y   YIQ
Sbjct: 152 TEEITTHQADLIIEADGAYSTLRRYMQLTPLFEYSQTYIQ 191


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +1

Query: 442 TLRVTTTPAALNAPLQGASGGTFGEMCAEPLFVYFSKYIQ 561
           T  +TT  A L     GA       M   PLF Y   YIQ
Sbjct: 152 TEEITTHQADLIIEADGAYSTLRRYMQLTPLFEYSQTYIQ 191


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +1

Query: 442 TLRVTTTPAALNAPLQGASGGTFGEMCAEPLFVYFSKYIQ 561
           T  +TT  A L     GA       M   PLF Y   YIQ
Sbjct: 152 TEEITTHQADLIIEADGAYSTLRRYMQLTPLFEYSQTYIQ 191


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 163 RVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGS 300
           R+E  S+L+   T  +   Q +R K +   +  L  P P S+ L +
Sbjct: 283 RIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLST 328


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 163 RVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGS 300
           R+E  S+L+   T  +   Q +R K +   +  L  P P S+ L +
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLST 117


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 163 RVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREPSP*SSFLGS 300
           R+E  S+L+   T  +   Q +R K +   +  L  P P S+ L +
Sbjct: 72  RIEIASALQLNETQVKIWFQNRRMKQKKRMKEGLIPPEPISASLST 117


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 363 SPSSSKSGAP 334
           SPSS+KSG+P
Sbjct: 74  SPSSTKSGSP 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,537
Number of Sequences: 336
Number of extensions: 2296
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)