Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0398.Seq
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 64 3e-11
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 61 1e-10
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 29 0.95
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 28 1.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 2.9
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 27 2.9
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 27 3.8
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 27 3.8
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo... 27 3.8
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 26 5.1
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 6.7
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 6.7
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 8.9
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 8.9
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 63.7 bits (148), Expect = 3e-11
Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 8/164 (4%)
Frame = +2
Query: 269 VELRKNKREETLQKRRNVPISYSTDEEEID-KNLATTDLD-EL----VMNAANAENPEAQ 430
+E+RK KREE L KRRN+ EE I + DL+ EL ++ A +++ EAQ
Sbjct: 36 IEIRKQKREENLNKRRNLVDVQEPAEETIPLEQDKENDLELELQLPDLLKALYSDDIEAQ 95
Query: 431 LAAVQQCRKLLSCDKNPPIDELIAAGYSPS--*FSAFRGLTIQRYSSRPLGL*QT*LPER 604
+ A + RK LS + NPPI ++I AG P F + ++ +S L + +
Sbjct: 96 IQATAKFRKALSKETNPPIQKVIDAGVVPRFVEFLSHENNLLKFEASWALTNVASGSSNQ 155
Query: 605 LHKQTK*SMPVQYLYSFSS*CQLMKNVCDQAVWALGNIIGDGPV 736
H + + ++ SS ++V +QAVWALGNI GD P+
Sbjct: 156 THVVVEANAVPVFVSLLSS---SEQDVREQAVWALGNIAGDSPM 196
Score = 61.3 bits (142), Expect = 1e-10
Identities = 30/57 (52%), Positives = 42/57 (73%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHE 678
++P V+ LS +N L+FE +WALTN+ASG+S QT+ VV A AVPVF+ LL S+ +
Sbjct: 122 VVPRFVEFLSHENN-LLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQ 177
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +1
Query: 511 LPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHEKRM 687
+P+ V LS ++ + + WAL NIA + + V+ G + L ++ S M
Sbjct: 165 VPVFVSLLSSSEQDVRE-QAVWALGNIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSM 222
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM 666
++P+L + + D L + WA++ ++ G + + ++ AG ++LLM
Sbjct: 249 VIPVLSKLIYTLDEDVL-VDALWAISYLSDGANEKIQAIIDAGIPRRLVELLM 300
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 61.3 bits (142), Expect = 1e-10
Identities = 32/57 (56%), Positives = 41/57 (71%)
Frame = +1
Query: 499 SCWILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMS 669
+C ++ VQ L +++ LQFE AWALTNIASGT+ QT VV +GAVP F+QLL S
Sbjct: 118 ACGVVDRFVQFLE-SEHHLLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSS 173
Score = 57.6 bits (133), Expect = 2e-09
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Frame = +2
Query: 269 VELRKNKREETLQKRRNVPISYSTD---EEEIDKNLATTDL---DELVMNAAN--AENPE 424
+E+RK KREE+L KRRN+ D EEE D++ + DE A+ +++ E
Sbjct: 33 IEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQSQVQMEQQMKDEFPKLTADVMSDDIE 92
Query: 425 AQLAAVQQCRKLLSCDKNPPIDELIAAGYSPS--*FSAFRGLTIQRYSSRPLGL*QT*LP 598
QL AV + RK LS + +PPID++IA G F +Q ++ L +
Sbjct: 93 LQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQFLESEHHLLQFEAAWALTNIASGTT 152
Query: 599 ERLHKQTK*SMPVQYLYSFSS*CQLMKNVCDQAVWALGNIIGD 727
++ +++ SS K+V +Q VWALGNI GD
Sbjct: 153 DQTRIVVDSGAVPRFIQLLSS---PEKDVREQVVWALGNIAGD 192
Score = 31.5 bits (68), Expect = 0.13
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +1
Query: 514 PILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHEK 681
P LV+ LS + + +Q ++ NI +GT AQT ++ GA+ F LL +H+K
Sbjct: 293 PRLVELLS-SPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLL--SHQK 345
Score = 29.9 bits (64), Expect = 0.41
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 511 LPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMST 672
+P +Q LS + + + WAL NIA +SA + V+ G + L +L S+
Sbjct: 164 VPRFIQLLSSPEKDVRE-QVVWALGNIAGDSSACRDYVLGNGVLQPLLNILQSS 216
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 514 PILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMS 669
P+L S A + ++ W L+N+ G + N + AVP+ +LL S
Sbjct: 208 PLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLLYS 259
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 28.7 bits (61), Expect = 0.95
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 269 VELRKNKREETL--QKRRNVPISYSTDEEEIDKNLATTDLDEL-VMNAANAENPEAQLAA 439
+E + K E++L Q+RR + S E DKN++ DLDE +++ A N +A A
Sbjct: 59 LERERAKLEQSLSFQQRRAEMLEKSLRELRKDKNISVKDLDEFHLLDKPAANNTKADAEA 118
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 224 CILEHMHAVFRLISRHFICARCLDTVRGNYTKKQRINIKLLSSK 93
C+ E +FRL +C C + NY++ Q N L SK
Sbjct: 93 CLKEAPGFIFRLQGSIKVCRPCASILVNNYSRSQLFNHSLNESK 136
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = -2
Query: 495 SSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 340
+SS F S ++ ++++ S FS++++ ++SS+ S + LSISSSS
Sbjct: 547 TSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSS 598
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = -2
Query: 507 PAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 340
P + SS+I S SSF ++++ +S S+ ++ TSSS ++ + S SSSS
Sbjct: 300 PTSTSSTISSSSSSSSSFSSTLSSSSMSSS-SSFSSSPTSSSSTISSSSSSPSSSS 354
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 691 ITYVFHELTSRAEGI-QVLHRHGLLCLFVQTFRKLCLLKPKRSRTVTLDCQPSKGTE 524
I Y+ +S + I Q L+RHGL+ + + + + LK K + + + Q G E
Sbjct: 1652 IAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKE 1708
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 118 ILCFFV*LPRT-VSRQRAQ-IKWRLIKRKTACM 210
IL F+ +PRT + + R + + WR+I R AC+
Sbjct: 400 ILASFLPIPRTKIHQMRVKHVHWRIINRVVACL 432
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 584 VKAQAVSNCNAGLSALERH*TRMGSIQQL*AHQ 486
V+ Q+VS+ N G LE+H +G +Q AH+
Sbjct: 144 VEGQSVSHANVGERWLEKHLQSVGRTKQELAHE 176
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 415 FCVGSVHHQLIKVGGSEVLVDLLLI 341
+C G H ++ +GGS V +DL+ I
Sbjct: 263 YCTGDGHKMVMSIGGSTVDLDLVQI 287
>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 748 KSRKDWTVADYITEGPYC-LITYVFHELTSRAEGIQ 644
K +++W V DY+ +G + T+ LTS AE ++
Sbjct: 57 KEKEEWNVLDYVDQGKLREVATFTQLALTSAAEALK 92
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 510 YPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 340
YP A +S G FL +S+ + S ++L++ TSS+ S S SS S
Sbjct: 485 YPEASLTSFGNFLGTATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRS 541
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 6.7
Identities = 6/28 (21%), Positives = 17/28 (60%)
Frame = -1
Query: 700 YCLITYVFHELTSRAEGIQVLHRHGLLC 617
YC + ++H+L + E +++ + ++C
Sbjct: 987 YCQLAMIYHQLEKKEEAVELARKAVIVC 1014
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 266 TVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATT 376
++ ++N+ T+QK V S+ EEE K+L T
Sbjct: 306 SIPKKQNESSSTIQKENTVQQEASSSEEEAVKSLPET 342
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 266 TVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 367
T+E KN +T + ++ +SY D + +DK +
Sbjct: 137 TLETEKNLNSKTSESLKSPTLSYPFDLDSLDKRI 170
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 332 YSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDEL 496
+S+DEEE+D T+ +E N A E + +Q + + +K P DE+
Sbjct: 146 FSSDEEEMDDISVTSSEEEEEENGARIEELNSDEEDAEQAEEEI-LEKPVPKDEV 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,388
Number of Sequences: 5004
Number of extensions: 66066
Number of successful extensions: 260
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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