Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0398.Seq
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 71 1e-12
05_01_0405 - 3191639-3192059,3192107-3192234,3192312-3192440,319... 70 2e-12
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838... 70 2e-12
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 46 3e-05
01_01_0402 + 3046504-3046582,3047265-3047487,3047954-3048107,304... 42 7e-04
01_01_0334 - 2698347-2699020,2699321-2699477,2699576-2699647,269... 34 0.11
03_04_0180 + 18173005-18173976,18174066-18174170 30 1.7
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 29 4.0
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.3
07_03_0889 - 22316945-22317062,22317149-22318794 29 5.3
09_04_0127 + 14883661-14884226,14884335-14885235 28 7.0
06_01_0273 + 2022479-2022592,2022830-2022973,2023524-2023601,202... 28 7.0
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 28 9.3
02_03_0380 + 18335903-18337837 28 9.3
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 70.9 bits (166), Expect = 1e-12
Identities = 33/57 (57%), Positives = 42/57 (73%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHE 678
+LP V+ L+R + P LQFE AWALTNIASGT+A T V+ GAVP+F++LL S E
Sbjct: 119 VLPRFVEFLTREEYPQLQFEAAWALTNIASGTAANTMAVIEHGAVPIFVKLLSSPRE 175
Score = 50.8 bits (116), Expect = 1e-06
Identities = 48/160 (30%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Frame = +2
Query: 263 VTVELRKNKREETLQKRRNVPISYSTDE---EEIDKNLATTDLDELVMNAAN--AENPEA 427
+TV LRK R+ L+++R P + + E + + L+ L M +++
Sbjct: 32 ITVILRKADRDRALKEKRRRPTATAAAEGLPQAAHSSAIEKKLESLPMMVQGLYSDDSSM 91
Query: 428 QLAAVQQCRKLLSCDKNPPIDELIAAGYSPS*FSAFRGLTIQRYSSRPLGL*QT*LPERL 607
QL + Q RKLLS D PPIDE+I +G P F F LT + Y L
Sbjct: 92 QLESTTQFRKLLSVDHCPPIDEVIRSGVLPR-FVEF--LTREEYPQLQFEAAWA-LTNIA 147
Query: 608 HKQTK*SMPVQYLYSFSS*CQLMKNVCDQAVWALGNIIGD 727
+M V + +L+ + + AVWALGN+ GD
Sbjct: 148 SGTAANTMAVIEHGAVPIFVKLLSSPREDAVWALGNVAGD 187
Score = 34.7 bits (76), Expect = 0.081
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 511 LPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 663
LP L L+ +++ E W ++NI +GT Q V+ + + L LL
Sbjct: 328 LPCLFNLLTTTQKKSVKREACWTISNITAGTKEQIQAVIDSNIIAPLLHLL 378
>05_01_0405 -
3191639-3192059,3192107-3192234,3192312-3192440,
3193538-3193616,3193716-3193879,3193968-3194153,
3194258-3194389,3194484-3194575,3195054-3195150,
3195258-3195485
Length = 551
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/57 (57%), Positives = 40/57 (70%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHE 678
++P + L R D P LQFE AWALTNIASGTS T VV +GAVP+F++LL S E
Sbjct: 122 VVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSE 178
Score = 52.8 bits (121), Expect = 3e-07
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 9/164 (5%)
Frame = +2
Query: 269 VELRKNKREETLQKRRN--VPISYSTDEEEIDKNLATTDLDE------LVMNAANAENPE 424
VE+RK++REE+L K+R +P + + ++ L + ++ A +++
Sbjct: 34 VEIRKSRREESLLKKRRDGLPAAAAAAAAASPLLAHSSALQQKLEGLPAMVQAVQSDDSA 93
Query: 425 AQLAAVQQCRKLLSCDKNPPIDELIAAGYSPS*FSAFRGLTIQRYSSRPLGL*QT*LPER 604
QL A Q RKLLS +++PPI+E+I G P F AF T +
Sbjct: 94 VQLEATTQFRKLLSIERSPPIEEVINTGVVPR-FIAFLQREDYPQLQFEAAWALTNIASG 152
Query: 605 LHKQTK*SMPVQYLYSFSS*CQL-MKNVCDQAVWALGNIIGDGP 733
TK + + F ++V +QAVWALGN+ GD P
Sbjct: 153 TSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSP 196
Score = 31.1 bits (67), Expect = 1.00
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 523 VQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM 666
+Q L + + + + WAL+ ++ GT+ + V+ +G P ++LLM
Sbjct: 253 LQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLM 300
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHEK 681
+ P LV+ L L + NI +G QT V+ A+P L LL + H+K
Sbjct: 291 VFPRLVELLMHPSASVL-IPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKK 347
>01_01_1062 +
8381281-8381490,8382353-8382449,8382546-8382637,
8382729-8382860,8382975-8383160,8383244-8383407,
8383514-8383592,8384484-8384612,8385102-8385229,
8385348-8385711
Length = 526
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/57 (57%), Positives = 42/57 (73%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHE 678
++P VQ L+R D P LQFE AWALTNIASGTS T V+ GAVP+F++LL S+ +
Sbjct: 116 VVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD 172
Score = 54.8 bits (126), Expect = 7e-08
Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 11/166 (6%)
Frame = +2
Query: 269 VELRKNKREETLQKRRN--------VPISYSTDEEEIDKNLATTDLDELVMNAANAENPE 424
VE+RK++REE+L K+R VP S +T +DK L + L ++ + +N
Sbjct: 34 VEIRKSRREESLLKKRREGLQAQAPVPASAATG---VDKKLES--LPAMIGGVYSDDN-N 87
Query: 425 AQLAAVQQCRKLLSCDKNPPIDELIAAGYSPS*FSAFRGLTIQRYSSRPL--GL*QT*LP 598
QL A Q RKLLS +++PPI+E+I +G P F F LT + + T +
Sbjct: 88 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPR-FVQF--LTREDFPQLQFEAAWALTNIA 144
Query: 599 ERLHKQTK*SMPVQYLYSFSS*C-QLMKNVCDQAVWALGNIIGDGP 733
+ TK + + F +V +QAVWALGN+ GD P
Sbjct: 145 SGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP 190
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 511 LPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM 666
LP L + + D L + WAL+ ++ GT+ + V+ AG P ++LL+
Sbjct: 244 LPALARLIHSNDEEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 294
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHEK 681
+ P LV+ L +P++ + NI +G AQT ++ A+P L LL +K
Sbjct: 285 VCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK 341
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/56 (46%), Positives = 33/56 (58%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTH 675
+LP LSR ++P LQ E AW LTNIA+ S T V GAVP ++LL S +
Sbjct: 155 VLPRFSDFLSRHEHPQLQMEAAWVLTNIAA--SDYTLLVAECGAVPRLVELLESAN 208
Score = 35.5 bits (78), Expect = 0.046
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Frame = +2
Query: 335 STDEEEIDKNLATTDLDEL--VMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAG 508
S E + A ++L+ L ++ +++ +QL A Q R+LLS +KNP + ++I A
Sbjct: 95 SPPAESVPPTAADSELEGLSEMVEKVWSDDTTSQLEATIQFRRLLSDEKNPTVIKIIRAD 154
Query: 509 YSPS*FSAFRGLTIQRYSSRPLGL*QT*LPERLHKQTK*SMPVQYLYSFSS*CQLMK--- 679
P FS F + R+ L + + + + ++ V + +L++
Sbjct: 155 VLPR-FSDF----LSRHEHPQLQMEAAWVLTNI-AASDYTLLVAECGAVPRLVELLESAN 208
Query: 680 -NVCDQAVWALGNIIGDGPVLSRLL 751
N+ QA+WALGNI D P ++
Sbjct: 209 ANIRHQAIWALGNIAADVPTCREIV 233
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM 666
IL I+ Q + D L + WAL I G S V+ AGA P + LLM
Sbjct: 279 ILDIISQLIHSVDEKILG-DACWALCYICDGVSDGIQHVLDAGACPQLVNLLM 330
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 502 CWILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFL 654
C +P LV+ L A N ++ + WAL NIA+ V+ GAV L
Sbjct: 194 CGAVPRLVELLESA-NANIRHQAIWALGNIAADVPTCREIVLDHGAVTPLL 243
>01_01_0402 +
3046504-3046582,3047265-3047487,3047954-3048107,
3048253-3048355,3048554-3048738,3048972-3049051,
3049433-3049511,3050015-3050096,3050221-3050279,
3050379-3050684,3050825-3050989
Length = 504
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/50 (38%), Positives = 34/50 (68%)
Frame = +1
Query: 520 LVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMS 669
L++CL ++DN L+ E++WAL+NIA+G+ + + A PV ++L+ S
Sbjct: 335 LIKCL-KSDNRVLRKESSWALSNIAAGSFEHKKLIFASEATPVLIRLVTS 383
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 511 LPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHA 633
+P+LVQ LS + E AW LTNIA+G +T ++ A
Sbjct: 137 VPLLVQYLSFGSSDEQLLEAAWCLTNIAAGEPEETKSLLPA 177
>01_01_0334 -
2698347-2699020,2699321-2699477,2699576-2699647,
2699697-2700641,2701183-2701259,2701908-2702064
Length = 693
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 305 QKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPP 484
Q +R + S ST + +D T L LVM A N PE LA R ++ D +
Sbjct: 272 QSKRTLTSSKSTRDHSLDAPAVMTGLQSLVMTAENLVIPEHALAPYVPERIIVDGDVDAA 331
Query: 485 IDEL 496
+DE+
Sbjct: 332 MDEI 335
>03_04_0180 + 18173005-18173976,18174066-18174170
Length = 358
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 520 LVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMS 669
LV+ L A +PA + A L +A + + AGAVPV + LL S
Sbjct: 139 LVRALRSAASPAARENAACTLLRLAQLDGSAAAAIGRAGAVPVLVSLLES 188
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 263 VTVELRKNKREETLQKRRNVPISYSTDEEEID 358
V ++ RK+ + E +K+R+V SYS+ + E++
Sbjct: 420 VDIDTRKHPKREHRKKKRDVTESYSSSDSEVE 451
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 520 LVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 663
LV L A +PA + A AL ++ + + AGA+P+ + LL
Sbjct: 151 LVHALKSAASPAARENAACALLRLSQLDGSAAASIGRAGAIPLLVSLL 198
>07_03_0889 - 22316945-22317062,22317149-22318794
Length = 587
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 514 PILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 663
P+LV A + A Q + L IASG S+ V+ GAV + +L
Sbjct: 332 PVLVSLCRGAADEAAQIQAMELLAAIASGDSSVREAVLQEGAVESLVSVL 381
>09_04_0127 + 14883661-14884226,14884335-14885235
Length = 488
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 511 LPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM 666
+P V L+ +D P Q + A+ L +A + A + AGA L+L +
Sbjct: 326 VPAFVDVLNWSDEPGCQEKAAYILMVLAHRSYADRAAMAEAGATSALLELTL 377
>06_01_0273 +
2022479-2022592,2022830-2022973,2023524-2023601,
2025361-2025585,2025684-2025782,2026177-2026235,
2026351-2026501,2026590-2026754
Length = 344
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/68 (35%), Positives = 34/68 (50%)
Frame = +2
Query: 272 ELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQC 451
E RK K EE+ VP + EE I K TD +EL+ N + E + VQ+C
Sbjct: 187 EERKQKDEES----NGVPKVNISPEEAIAKLAKDTD-NELI--EINKQLEELRQMVVQKC 239
Query: 452 RKLLSCDK 475
RK+ + +K
Sbjct: 240 RKMTTYEK 247
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 299 TLQKRRNVPISYSTDEEEIDKNLATTDLDE 388
T K+RN + Y TDE+E D + +D +E
Sbjct: 444 TPSKKRNKALEYDTDEDEDDADPMKSDSEE 473
>02_03_0380 + 18335903-18337837
Length = 644
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 305 QKRRNVPISYSTDEEEIDKNLATTDLDELVMNAA 406
Q++R P+ Y T EEI A LDEL A
Sbjct: 420 QQKREFPLGYKTFGEEIPPQYAIQVLDELTKGEA 453
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,824,620
Number of Sequences: 37544
Number of extensions: 435236
Number of successful extensions: 1189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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