Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0398.Seq
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 91 1e-18
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 91 1e-18
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 82 4e-16
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 49 3e-06
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 49 3e-06
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 49 3e-06
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 31 0.67
AC006621-3|AAK68263.1| 368|Caenorhabditis elegans Hypothetical ... 31 0.67
Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical p... 31 1.2
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical... 31 1.2
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical... 31 1.2
AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical... 31 1.2
AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical... 31 1.2
AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 30 1.6
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 29 2.7
AF024493-2|AAB70323.1| 322|Caenorhabditis elegans Hypothetical ... 29 2.7
AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical ... 29 3.6
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ... 29 3.6
Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical pr... 28 6.3
U97008-4|AAB52312.1| 430|Caenorhabditis elegans Hypothetical pr... 28 6.3
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 90.6 bits (215), Expect = 1e-18
Identities = 60/159 (37%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Frame = +2
Query: 269 VELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLD--ELVMNAANAENPEAQLAAV 442
V +RK+KREE + KRRN+ D E D + L + AA + +P QL AV
Sbjct: 27 VSIRKDKREEAISKRRNINTQIEDDSETSTTPPGPFDANLLRLTVAAAQSSDPAEQLTAV 86
Query: 443 QQCRKLLSCDKNPPIDELIAAGYSPS*FSAFRGL--TIQRYSSRPLGL*QT*LPERLHKQ 616
QQ RK+LS D+NPPID+LI +G P +Q ++ L + E+
Sbjct: 87 QQARKMLSTDRNPPIDDLIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAV 146
Query: 617 TK*SMPVQYLYSFSS*CQLMKNVCDQAVWALGNIIGDGP 733
+L S C + NVC+Q+VWALGNIIGDGP
Sbjct: 147 VNAGAVPLFLQLLS--CGNL-NVCEQSVWALGNIIGDGP 182
Score = 82.2 bits (194), Expect = 4e-16
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 663
ILP+LVQCLS D P LQFE AWALTNIASGTS QT VV+AGAVP+FLQLL
Sbjct: 109 ILPVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLL 159
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 90.6 bits (215), Expect = 1e-18
Identities = 60/159 (37%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Frame = +2
Query: 269 VELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLD--ELVMNAANAENPEAQLAAV 442
V +RK+KREE + KRRN+ D E D + L + AA + +P QL AV
Sbjct: 27 VSIRKDKREEAISKRRNINTQIEDDSETSTTPPGPFDANLLRLTVAAAQSSDPAEQLTAV 86
Query: 443 QQCRKLLSCDKNPPIDELIAAGYSPS*FSAFRGL--TIQRYSSRPLGL*QT*LPERLHKQ 616
QQ RK+LS D+NPPID+LI +G P +Q ++ L + E+
Sbjct: 87 QQARKMLSTDRNPPIDDLIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAV 146
Query: 617 TK*SMPVQYLYSFSS*CQLMKNVCDQAVWALGNIIGDGP 733
+L S C + NVC+Q+VWALGNIIGDGP
Sbjct: 147 VNAGAVPLFLQLLS--CGNL-NVCEQSVWALGNIIGDGP 182
Score = 82.2 bits (194), Expect = 4e-16
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 663
ILP+LVQCLS D P LQFE AWALTNIASGTS QT VV+AGAVP+FLQLL
Sbjct: 109 ILPVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLL 159
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 82.2 bits (194), Expect = 4e-16
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 663
ILP+LVQCLS D P LQFE AWALTNIASGTS QT VV+AGAVP+FLQLL
Sbjct: 18 ILPVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLL 68
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +2
Query: 458 LLSCDKNPPIDELIAAGYSPS*FSAFRGLTIQRYSSRPLGL*QT*LPERLHKQTK*SMPV 637
+LS D+NPPID+LI +G P L T + +QT+ +
Sbjct: 1 MLSTDRNPPIDDLIGSGILPVLVQCLSSTDPNLQFEAAWAL--TNIASGTSEQTQAVVNA 58
Query: 638 QYLYSFSS*CQLMK-NVCDQAVWALGNIIGDGP 733
+ F NVC+Q+VWALGNIIGDGP
Sbjct: 59 GAVPLFLQLLSCGNLNVCEQSVWALGNIIGDGP 91
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/59 (45%), Positives = 35/59 (59%)
Frame = +1
Query: 502 CWILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHE 678
C +L LVQ LS +N +Q+E AWALTNI SG++ QT V AG + L S H+
Sbjct: 131 CGLLQALVQALS-VENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHL--SVHQ 186
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIA-SGTSAQTNKVVHAGAVPVFLQLLMSTH 675
+LP+L+ L D+ QFE +WAL+N+A GT+ Q ++ VP Q L+ T+
Sbjct: 388 LLPVLINVLKSGDHKC-QFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQTN 443
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Frame = +2
Query: 266 TVELRKNKREETLQKRRNV--------PISYSTDEEEIDKNLATTDLDELVMNAANAENP 421
+VE+RK K + + KRRN+ S + E+I ++T L + A + NP
Sbjct: 42 SVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKISHQQSSTRLSNDEIRAILSNNP 101
Query: 422 --EAQLAAVQQCRKLLSCDKNPPIDELIAAG 508
+ + + RK LS KNPPIDE+I G
Sbjct: 102 SEDDMVRCFESLRKSLSKTKNPPIDEVIHCG 132
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 520 LVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHEK 681
++ + + + ++ E W ++NI +GT Q V+ A +PV + +L S K
Sbjct: 349 ILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDHK 402
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/59 (45%), Positives = 35/59 (59%)
Frame = +1
Query: 502 CWILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHE 678
C +L LVQ LS +N +Q+E AWALTNI SG++ QT V AG + L S H+
Sbjct: 131 CGLLQALVQALS-VENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHL--SVHQ 186
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIA-SGTSAQTNKVVHAGAVPVFLQLLMSTH 675
+LP+L+ L D+ QFE +WAL+N+A GT+ Q ++ VP Q L+ T+
Sbjct: 388 LLPVLINVLKSGDHKC-QFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQTN 443
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Frame = +2
Query: 266 TVELRKNKREETLQKRRNV--------PISYSTDEEEIDKNLATTDLDELVMNAANAENP 421
+VE+RK K + + KRRN+ S + E+I ++T L + A + NP
Sbjct: 42 SVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKISHQQSSTRLSNDEIRAILSNNP 101
Query: 422 --EAQLAAVQQCRKLLSCDKNPPIDELIAAG 508
+ + + RK LS KNPPIDE+I G
Sbjct: 102 SEDDMVRCFESLRKSLSKTKNPPIDEVIHCG 132
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 520 LVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHEK 681
++ + + + ++ E W ++NI +GT Q V+ A +PV + +L S K
Sbjct: 349 ILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDHK 402
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/59 (45%), Positives = 35/59 (59%)
Frame = +1
Query: 502 CWILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHE 678
C +L LVQ LS +N +Q+E AWALTNI SG++ QT V AG + L S H+
Sbjct: 131 CGLLQALVQALS-VENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHL--SVHQ 186
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 508 ILPILVQCLSRADNPALQFETAWALTNIA-SGTSAQTNKVVHAGAVPVFLQLLMSTH 675
+LP+L+ L D+ QFE +WAL+N+A GT+ Q ++ VP Q L+ T+
Sbjct: 388 LLPVLINVLKSGDHKC-QFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQTN 443
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Frame = +2
Query: 266 TVELRKNKREETLQKRRNV--------PISYSTDEEEIDKNLATTDLDELVMNAANAENP 421
+VE+RK K + + KRRN+ S + E+I ++T L + A + NP
Sbjct: 42 SVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPEKISHQQSSTRLSNDEIRAILSNNP 101
Query: 422 --EAQLAAVQQCRKLLSCDKNPPIDELIAAG 508
+ + + RK LS KNPPIDE+I G
Sbjct: 102 SEDDMVRCFESLRKSLSKTKNPPIDEVIHCG 132
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 520 LVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSTHEK 681
++ + + + ++ E W ++NI +GT Q V+ A +PV + +L S K
Sbjct: 349 ILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKSGDHK 402
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +2
Query: 281 KNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANA 412
+ +R + +KR++ S T +EE ++LATTD + V+N A++
Sbjct: 260 ERERARSRRKRKDEASSAVTSDEEDQEDLATTDSENPVINGASS 303
>AC006621-3|AAK68263.1| 368|Caenorhabditis elegans Hypothetical
protein C52A10.3 protein.
Length = 368
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 517 WGVSSSYELINRRVFITREQFSALLHS 437
W YEL+ R +F+T EQ S +L+S
Sbjct: 193 WLTKCKYELVGREIFLTSEQLSKVLNS 219
>Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 583 LKPKRSRTVTLDCQPSKGTELGWGVSSSYELINRRVFITREQFSALLH 440
LKPK SRT+ + +K +E+ W + S +L V + F L+H
Sbjct: 24 LKPKHSRTIIVGTHKAKSSEMFWNLLESIQLEKHPVMTWK--FCNLVH 69
>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
protein Y105C5B.21b protein.
Length = 1084
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 511 LPILVQCLSRADNPALQFETAWALTNIASGTSAQTNK--VVHAGAVPVFLQLLMSTHE 678
+P L+ L R+D P +Q L N++ G NK V+ A V + ++L +TH+
Sbjct: 565 IPKLIALL-RSDTPRIQKNACACLKNLSFGKENDANKLAVMEADGVRLIAEVLRTTHD 621
>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
protein Y105C5B.21a protein.
Length = 1254
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 511 LPILVQCLSRADNPALQFETAWALTNIASGTSAQTNK--VVHAGAVPVFLQLLMSTHE 678
+P L+ L R+D P +Q L N++ G NK V+ A V + ++L +TH+
Sbjct: 735 IPKLIALL-RSDTPRIQKNACACLKNLSFGKENDANKLAVMEADGVRLIAEVLRTTHD 791
>AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 583 LKPKRSRTVTLDCQPSKGTELGWGVSSSYELINRRVFITREQFSALLH 440
LKPK SRT+ + +K +E+ W + S +L V + F L+H
Sbjct: 24 LKPKHSRTIIVGTHKAKSSEMFWNLLESIQLEKHPVMTWK--FCNLVH 69
>AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical
protein B0511.11 protein.
Length = 368
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 287 KREETLQKRRNVPIS--YSTDEEEIDKNLATTDLDE 388
K+E+ KR NVP++ YS + KN +TT L E
Sbjct: 98 KKEDDKSKRENVPLTVVYSNPSISVSKNFSTTPLAE 133
>AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical
protein ZC581.9 protein.
Length = 827
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 227 ACILEHMHAVFRLISRHFICARCLDTV 147
A ILE+M A+FR +S F+ +CLD +
Sbjct: 447 AFILENMSALFRRLSDEFVEDKCLDVI 473
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 269 VELRKNKREETLQKRRNVPISYSTDEEEIDKNL 367
V++RKN+R+E ++ R + + S EE + L
Sbjct: 35 VQIRKNRRDEKFERNRQITVQRSLSHEETSELL 67
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 269 VELRKNKREETLQKRRNVPISYSTDEEEIDKNL 367
V++RKN+R+E ++ R + + S EE + L
Sbjct: 35 VQIRKNRRDEKFERNRQITVQRSLSHEETSELL 67
>AF024493-2|AAB70323.1| 322|Caenorhabditis elegans Hypothetical
protein F23F1.5 protein.
Length = 322
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 266 TVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDE 388
T+E +KN R +T K RN+ T +E+ ++ + TT ++
Sbjct: 49 TLERQKNGRFDTFMKLRNLAFDDVTSDEDDEQKIETTTAEK 89
>AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical
protein F23H11.4b protein.
Length = 598
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 269 VELRKNKREETLQKR-RNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQ 445
V L +K+E+ L R RN+ +S+ DE+ + + T D+ + + A + L V
Sbjct: 341 VSLTSSKKEKRLHCRLRNMQLSFHDDEDSTEPSNGTFDIKGIYLFRHMASDTPYILIHVG 400
Query: 446 QCRKLLS-CDKNPP 484
+ R ++S ++PP
Sbjct: 401 EKRNVISFIPEDPP 414
>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
protein F23H11.4a protein.
Length = 1003
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 269 VELRKNKREETLQKR-RNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQ 445
V L +K+E+ L R RN+ +S+ DE+ + + T D+ + + A + L V
Sbjct: 341 VSLTSSKKEKRLHCRLRNMQLSFHDDEDSTEPSNGTFDIKGIYLFRHMASDTPYILIHVG 400
Query: 446 QCRKLLS-CDKNPP 484
+ R ++S ++PP
Sbjct: 401 EKRNVISFIPEDPP 414
>Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical
protein F53B2.5 protein.
Length = 447
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 511 LPILVQCLSRADNPALQFETAWALTNIASGTSA 609
L IL++ L R+ N L +T WA+ NIA+ S+
Sbjct: 85 LDILIK-LVRSQNARLSSQTVWAIANIAADCSS 116
>U97008-4|AAB52312.1| 430|Caenorhabditis elegans Hypothetical
protein C03G6.12 protein.
Length = 430
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -1
Query: 745 SRKDWTVADYITEGPYCLITYVFHELTSRAEGIQVLHRHGLL 620
+RK WT + +T Y FHEL+SR + VL RH LL
Sbjct: 240 NRKYWTHCNMLTTIEYFKTFKFFHELSSRDK--FVLARHTLL 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,937,033
Number of Sequences: 27780
Number of extensions: 382952
Number of successful extensions: 1250
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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