Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0398.Seq
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.77 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   1.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   1.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   1.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   1.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.4  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 727 VADYITEGPYCLITYVFHELTSRAEGIQVL 638
           ++ Y T    C IT  FHE+  RA  + VL
Sbjct: 329 ISTYFTFTRPCGITLTFHEILKRANTLFVL 358


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 739 KDWTVADYITEGPYCLITYVFHELTSRAEGIQVLH 635
           + W   D I+  P   I  +F++    +E  Q+LH
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDFSESFQILH 200


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 739 KDWTVADYITEGPYCLITYVFHELTSRAEGIQVLH 635
           + W   D I+  P   I  +F++    +E  Q+LH
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDFSESFQILH 200


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 269 VELRKNKREETLQKRRNVPISYSTDEEEIDK 361
           ++LR   +EE LQ RR   +     E+E +K
Sbjct: 25  IDLRSRTKEERLQYRREAWLVQQEREQEYEK 55


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 739 KDWTVADYITEGPYCLITYVFHELTSRAEGIQVLH 635
           + W   D I+  P   I  +F++    +E  Q+LH
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDFSESFQILH 200


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 65  TSDGGLTSIFTKYSTTHKGWS 3
           + DGG  S+  K  TTH G S
Sbjct: 442 SDDGGPLSLKNKVETTHSGTS 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,756
Number of Sequences: 438
Number of extensions: 4337
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)