Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0393.Seq
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    31   0.62 
At3g46120.1 68416.m04991 calcineurin-like phosphoesterase family...    28   4.4  
At1g52940.1 68414.m05987 calcineurin-like phosphoesterase family...    28   4.4  
At4g33630.2 68417.m04778 expressed protein                             28   5.8  
At4g33630.1 68417.m04777 expressed protein                             28   5.8  
At2g18130.1 68415.m02110 purple acid phosphatase (PAP11) identic...    28   5.8  
At1g64960.1 68414.m07363 expressed protein                             27   7.7  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   7.7  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 153 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGRGPLREP 272
           D+D  E CS+ E ES ++E  L +++A N++ GR  L  P
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGRDLLVTP 472


>At3g46120.1 68416.m04991 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 388

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 202 LKNVDSNVKGRKTVYQGEAHYVNHHPN 282
           L N  SN KG+  ++ G+  Y + HPN
Sbjct: 128 LYNYMSNPKGQAVLFAGDLSYADDHPN 154


>At1g52940.1 68414.m05987 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 396

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 202 LKNVDSNVKGRKTVYQGEAHYVNHHPN 282
           L N  SN KG+  ++ G+  Y + HPN
Sbjct: 136 LYNYMSNPKGQAVLFAGDLSYADDHPN 162


>At4g33630.2 68417.m04778 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 419 PSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVP 321
           P +++  F P  S    RL+PSS +S  P R+P
Sbjct: 7   PPSQNLAFSPAASATSSRLTPSSKRSFYPHRLP 39


>At4g33630.1 68417.m04777 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 419 PSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVP 321
           P +++  F P  S    RL+PSS +S  P R+P
Sbjct: 7   PPSQNLAFSPAASATSSRLTPSSKRSFYPHRLP 39


>At2g18130.1 68415.m02110 purple acid phosphatase (PAP11) identical
           to purple acid phosphatase (PAP11) GI:20257484 from
           [Arabidopsis thaliana]
          Length = 441

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 202 LKNVDSNVKGRKTVYQGEAHYVNHHPN 282
           L N  SN KG+  ++ G+  Y + HPN
Sbjct: 156 LYNYMSNPKGQAVLFVGDLSYADDHPN 182


>At1g64960.1 68414.m07363 expressed protein
          Length = 1168

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 300 RCRKALNRNPKGSPRF 347
           RCR  +NRNPK   RF
Sbjct: 552 RCRTLINRNPKAGARF 567


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 141  IKRIDRDRVECCSSLEQESTIKERGLQRQRAK 236
            ++ +  + VE C +LE  ST+K+R +++ + +
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQLKGR 1371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,494,758
Number of Sequences: 28952
Number of extensions: 248146
Number of successful extensions: 521
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)