Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0392.Seq
         (715 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.5  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.5  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   7.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.9  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 432 PSSERPQRTRVETTNSPAGSRLPSVSTS 349
           PS   PQ +    + SPA    P VS +
Sbjct: 40  PSGSSPQHSSSSASTSPAARMYPYVSAA 67


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 432 PSSERPQRTRVETTNSPAGSRLPSVSTS 349
           PS   PQ +    + SPA    P VS +
Sbjct: 40  PSGSSPQHSSSSASTSPAARMYPYVSAA 67


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 293 EDYHNGFKKTDKHPPKNWGDVDTLGN 370
           ED H  F+    H P  W +++T  N
Sbjct: 79  EDVHKVFQHLMIHRPNWWHELETKFN 104


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 434 YPFNPCLTESQYK 472
           +PF+PC   + YK
Sbjct: 61  FPFSPCNNTANYK 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,930
Number of Sequences: 336
Number of extensions: 3179
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)