Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0392.Seq
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 31 0.91
07_01_0588 + 4370771-4370983,4371069-4371167,4371268-4371399,437... 30 1.6
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 29 2.8
03_05_0447 - 24421442-24422767 29 2.8
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 3.7
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 29 3.7
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557... 29 3.7
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 29 4.8
07_03_0066 - 13011785-13011998,13012570-13012730,13013396-130134... 29 4.8
02_05_0496 - 29499959-29500653,29501039-29501093 29 4.8
02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728 29 4.8
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712... 29 4.8
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 29 4.8
01_01_0053 + 409447-409818 29 4.8
06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282... 28 6.4
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 28 6.4
01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112... 28 6.4
12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547 28 8.5
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 28 8.5
07_03_0833 - 21844123-21844929 28 8.5
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 28 8.5
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 28 8.5
01_06_0943 + 33204112-33204136,33204703-33205743,33205786-332059... 28 8.5
>06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 31.1 bits (67), Expect = 0.91
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -3
Query: 263 RSTLGVRRVDTDAGVQVLDTRLDTVKEGGSE*GLLVLQAVEYFPGKVL-LQQRLRVGSLE 87
RS LG + +Q L KEG + GL+V +Y GK L L +VG L+
Sbjct: 941 RSALGTAKAKLSRWLQDLQRLRQARKEGAASIGLIVSDMTKYLEGKDLELHASRQVGLLD 1000
Query: 86 LAETSL 69
++L
Sbjct: 1001 FIASAL 1006
>07_01_0588 +
4370771-4370983,4371069-4371167,4371268-4371399,
4372027-4372092,4372458-4372523,4372633-4372707,
4373423-4373653
Length = 293
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +3
Query: 504 PARGRAQGHVLPPHRHVEGDPAAAHRRPLPVQG--GRPLSCRPPTPAASWPTGRG 662
P G A G V PPH P H +P P +G P +PP P RG
Sbjct: 84 PVFGAAAG-VQPPHLRAPPPPQVFHAQPKPGEGAMAAPQPQQPPAPRPKVRARRG 137
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 18 SARKAATMVDAATLEKLEAG-FSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDC 194
S K + + + +++ + G F K D S + K+ TRE+ D+ K + +LDC
Sbjct: 94 SVWKGGMIKEYSKMDECKTGDFGKRPLIDDISTVCKWFTRELSDTTYGKNAQLAAKVLDC 153
Query: 195 I 197
+
Sbjct: 154 V 154
>03_05_0447 - 24421442-24422767
Length = 441
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 6 DGCSSARKAATMVDAATLEKLEAGFSKLQG-SDSK 107
DGC S+ ++ AA L +LEAG K G SD++
Sbjct: 63 DGCGSSGAGDALLAAAALARLEAGLRKRTGDSDAR 97
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -1
Query: 178 DPNEVFLFFRLSNTSLVRYFFSSDLE-SDPWSLLKPASNFSRVAASTIVAAFLA 20
D +++ L + LV YF+ SD SLL SNF+R+A+ + ++ F++
Sbjct: 139 DASKLALKHTRAGAPLVAYFWDKTFAWSDASSLLPFCSNFTRLASQSTMSGFVS 192
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -2
Query: 495 PETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 316
P + +Y ++ G+ GY S PQ ++ R+P+ T F GC S+F
Sbjct: 198 PTNWTESKIYITILQDGVYGYVESTPPQLYYNYVVSTNKSKRVPTTVT---FTNGCFSIF 254
Query: 315 LK 310
++
Sbjct: 255 VQ 256
>01_05_0105 -
18155135-18155297,18155379-18155515,18155621-18155734,
18155768-18155806,18156838-18156993
Length = 202
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = +3
Query: 513 GRAQGHVLPPHRHVEGDPAAAHRRPLPVQGGRPLSCRPPTPAASW 647
GR PP V G+ AA HRR LP G P P SW
Sbjct: 19 GRWAATTSPPGS-VGGESAARHRRALPRPHGEGEEIFPCIPITSW 62
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +3
Query: 525 GHVLPPHRHVEGDPAAAHRRPLPVQGGRPLSCRPPTPAASWPTGRG 662
GH+ H EGD A AHRRP V+ P PP P G G
Sbjct: 131 GHI-KFHSDDEGD-APAHRRPEIVRSAAPPVAPPPQMGPPPPYGSG 174
>07_03_0066 -
13011785-13011998,13012570-13012730,13013396-13013464,
13014228-13014449
Length = 221
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 552 VEGDPAAA-HRRPLPVQGGRPLSCRPPTPAASW 647
VE +PA + H P P G P + PP P+ +W
Sbjct: 28 VEANPAFSYHLSPFPTTVGTPETPPPPPPSEAW 60
>02_05_0496 - 29499959-29500653,29501039-29501093
Length = 249
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +3
Query: 504 PARGRAQGHVLPPHRHVEGDPAAAHRRPLPVQGGRPLSCRPPTPAASWPTGR 659
PA+ + G P H H + P P P Q P +PP + +GR
Sbjct: 85 PAQQQQHG---PEHEHHQAQPQPQQEPPPPAQDAPPAEPKPPKRGKNKKSGR 133
>02_04_0586 + 24100329-24100754,24102367-24102429,24102826-24103728
Length = 463
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +3
Query: 516 RAQGHVLPPHRHVEGDPAAAHRRPLPVQGGRPLSCRPPT 632
RA+ P H HVE PA A P P Q PPT
Sbjct: 216 RARDPPAPSHPHVEYQPAPAMLAPEPPQALTAKPAPPPT 254
>02_02_0140 +
7125914-7126264,7126426-7126677,7126766-7126861,
7127013-7127187,7127283-7127363,7127451-7127548,
7127828-7127920,7128607-7128678,7128998-7129117,
7129210-7129260,7130026-7130211,7130355-7130411
Length = 543
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 537 PPHRHVEGDPAAAHRRPLPVQGGRPLSCRPPTPAASWPTGRGIYHN 674
P H H+ P + P+ P RPP+P + P GRG+ H+
Sbjct: 17 PLHHHLLPSPPPSSSLLPPLLPSPP---RPPSPPSPLPGGRGVPHS 59
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +3
Query: 528 HVLPPHRHVEGDPAAAHRRPLPVQGGRPLSCRPPTPAASWP 650
H LPP RH P P PV P P TPA S P
Sbjct: 48 HPLPPSRHHPPPPEEPEPEPTPVNHHYP---PPTTPAYSLP 85
>01_01_0053 + 409447-409818
Length = 123
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Frame = +3
Query: 543 HRHVEGDPAAAHRRPLPVQGGRPLSCR---------PPTPAASWPTGR 659
H H D AA R ++G RP +CR PPTPA ++P R
Sbjct: 47 HHHPYDDCVAALRLYRRMRGARPHTCRDAGVGPHAPPPTPAEAFPAWR 94
>06_02_0208 -
13026296-13026654,13027394-13027497,13028109-13028200,
13028418-13028774,13029932-13030109,13030454-13030507,
13030701-13030784,13031521-13031714
Length = 473
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 504 PARGRAQGHVLPPHRHVEGDPAAAHRRPLPVQGGRPLSCRPPTPAA 641
PA A+ PP + PAA + +P P++ PP P A
Sbjct: 24 PAAAAAEAKATPPQPQPQQKPAAPVQPQMPTPRPWPVAFIPPKPVA 69
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 423 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 316
+RP+ +RV T +R+P + +++ G LS F
Sbjct: 36 KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71
>01_01_0120 +
1119319-1119447,1120565-1120632,1121682-1121928,
1122430-1122498,1122782-1122907,1123326-1123406,
1123484-1123561,1124084-1124319,1124399-1124545,
1124864-1125152,1125231-1125352,1125713-1125749
Length = 542
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 558 GDPAAAHRRPLPVQGGRPLSCRPPTPAASWPTGR 659
G+ AAA P GG P + PT + WP R
Sbjct: 23 GEAAAAASPPPDPAGGEPAAAADPTGSVLWPLPR 56
>12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547
Length = 359
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 433 VPLQPLPH-RVPVQGDGG-QGLRHPVQLEGELKGTFYPLTG 549
VP L H R ++GDG + LRHPV + L +PL G
Sbjct: 87 VPFHRLGHVRPSLEGDGVVEPLRHPVPIPLRLGRVHWPLVG 127
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 18 SARKAATMVDAATLEKLEAG-FSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDC 194
S K + + + +++ + G F K D S + K+ TRE D+ K + +LDC
Sbjct: 326 SVWKGGMIKEYSKIDECKTGDFGKRPLIDDISTVCKWFTREHSDTTYGKNAQLAAKVLDC 385
Query: 195 I 197
+
Sbjct: 386 V 386
>07_03_0833 - 21844123-21844929
Length = 268
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 537 PPHRHVEGDPAAAHRRPLPVQGGRPLSCRPPTPAASWPTGRGIY 668
PP V+ AAA P PV+ P RPPTPA+ P G++
Sbjct: 4 PPSHPVDLPLAAA---PPPVKAPTP---RPPTPASLQPESPGVF 41
>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 66 LEAGFSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTL-LDCIQSGVENLDSGVGIYA 242
L AG +KL SDS+S +K+ +FD LK+ F + + ++S + L S +
Sbjct: 1269 LLAGLAKLT-SDSRSTIKRSAVGVLFDILKDHGQLFSESFWTNILESVIYPLFSSERSSS 1327
Query: 243 PDAERTPCSP 272
D TP P
Sbjct: 1328 NDPTSTPSIP 1337
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 232 PTPESKFSTPDWIQS 188
P PE+K TPDW+QS
Sbjct: 117 PPPEAKKVTPDWLQS 131
>01_06_0943 +
33204112-33204136,33204703-33205743,33205786-33205926,
33206205-33206245,33208250-33208346,33208599-33208836,
33208937-33209087,33209155-33209454
Length = 677
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 535 YPLTGMSKETQQQLIDDHFLFKEGDRFPAGRQRLPLLG 648
Y G +++T+ Q D F R P R++LP++G
Sbjct: 317 YTREGCNRQTKLQCSSDEFFEIPNVRLPDNRKKLPVMG 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,840,046
Number of Sequences: 37544
Number of extensions: 456745
Number of successful extensions: 2137
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2135
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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