Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0392.Seq
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.   167   7e-44
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.   163   1e-42
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    24   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.8  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score =  167 bits (407), Expect = 7e-44
 Identities = 79/128 (61%), Positives = 88/128 (68%)
 Frame = +2

Query: 260 SVFAELFDPIIEDYHNGFKKTDKHPPKNWGDVDTLGNLDPAGEFVVSTRVRCGRSLEGYP 439
           ++FA+LFDPIIEDYH GFKKTDKHPPK++GDVD+LGNLDPA EF+VSTRVRCGRSLEGYP
Sbjct: 75  TLFADLFDPIIEDYHGGFKKTDKHPPKDFGDVDSLGNLDPANEFIVSTRVRCGRSLEGYP 134

Query: 440 FNPCLTESQYKEMEDKVSGTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFL 619
           FNPCLTE+QYKEME+KVS TL                                     FL
Sbjct: 135 FNPCLTEAQYKEMEEKVSSTLSGLEGELKGTFYPLTGMSKETQQKLIDDHFLFKEGDRFL 194

Query: 620 QAANACRF 643
           QAANACRF
Sbjct: 195 QAANACRF 202



 Score =  125 bits (301), Expect = 5e-31
 Identities = 59/72 (81%), Positives = 64/72 (88%)
 Frame = +3

Query: 39  MVDAATLEKLEAGFSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENL 218
           MVD A L+KLE GFSKL  SDSKSLLKKYL+++VFD LK KKTSF STLLDCIQSG+ENL
Sbjct: 1   MVDQAVLDKLETGFSKLSSSDSKSLLKKYLSKDVFDQLKTKKTSFDSTLLDCIQSGIENL 60

Query: 219 DSGVGIYAPDAE 254
           DSGVGIYAPDAE
Sbjct: 61  DSGVGIYAPDAE 72



 Score = 58.0 bits (134), Expect = 8e-11
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +3

Query: 645 WPTGRGIYHNENKTFLVWCNEED 713
           WPTGRGIYHN++KTFLVWCNEED
Sbjct: 203 WPTGRGIYHNDDKTFLVWCNEED 225


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score =  163 bits (397), Expect = 1e-42
 Identities = 78/128 (60%), Positives = 87/128 (67%)
 Frame = +2

Query: 260 SVFAELFDPIIEDYHNGFKKTDKHPPKNWGDVDTLGNLDPAGEFVVSTRVRCGRSLEGYP 439
           ++FA+LFDPIIEDYH GFKKTDKHPPK++GDVD+LGNLDPA EF+VSTRVRCGRSLEGYP
Sbjct: 59  TLFADLFDPIIEDYHGGFKKTDKHPPKDFGDVDSLGNLDPANEFIVSTRVRCGRSLEGYP 118

Query: 440 FNPCLTESQYKEMEDKVSGTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFL 619
           FNPCLTE+QYKEME+KVS TL                                     FL
Sbjct: 119 FNPCLTEAQYKEMEEKVSSTLSGLEGELKGTFYPLTGMSKETQQKLIDDHFLFKEGDRFL 178

Query: 620 QAANACRF 643
           QAANA RF
Sbjct: 179 QAANAXRF 186



 Score =  101 bits (242), Expect = 7e-24
 Identities = 47/56 (83%), Positives = 51/56 (91%)
 Frame = +3

Query: 87  LQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAE 254
           L  SDSKSLLKKYL+++VFD LK KKTSF STLLDCIQSG+ENLDSGVGIYAPDAE
Sbjct: 1   LSSSDSKSLLKKYLSKDVFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDAE 56



 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +3

Query: 645 WPTGRGIYHNENKT 686
           WPTGRGIYHN++KT
Sbjct: 187 WPTGRGIYHNDDKT 200


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 134 GSIRQPEEQEDLIRIHPP 187
           GS  QP+EQE L  + PP
Sbjct: 33  GSAEQPKEQEPLPPVTPP 50


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 16 QVPEKPQQWSTPQPSR 63
          Q P+ PQ+ S P PS+
Sbjct: 29 QSPQAPQRGSPPNPSQ 44


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 289 HRGLPQWLQEDRQAPAQEL 345
           H G   W QED  A  + L
Sbjct: 405 HHGSKSWTQEDMDAALEAL 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,417
Number of Sequences: 438
Number of extensions: 4219
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)