Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0392.Seq
(715 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65580.1 68418.m08251 expressed protein 31 1.0
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 30 1.3
At1g18420.1 68414.m02300 expressed protein contains Pfam profile... 30 1.8
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,... 29 3.1
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,... 29 3.1
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 29 3.1
At5g13590.1 68418.m01572 expressed protein 29 4.0
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ... 29 4.0
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ... 29 4.0
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ... 28 5.3
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 5.3
>At5g65580.1 68418.m08251 expressed protein
Length = 102
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 469 QGDGGQGLRHPVQLEGELKGTFYPLTGMSKE 561
Q DGG G R +L GE+KG +PLT M +E
Sbjct: 68 QTDGGDGERER-RLRGEVKGFSFPLTTMVEE 97
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = +3
Query: 531 VLPPHRHVEGDPAAAHRRPLPVQGGRPLSCRPPTPAASWPTGRGIYHNENKTFLVW 698
+ PP V P A HR P PV P+S PP P A + + H LVW
Sbjct: 247 ITPPPPPVVDPPPATHRAP-PVPRIPPVSGVPPAPFAPFAPLQPQQHPPPSPPLVW 301
>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 581
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 302 HNGFKKTDKHPPKNWGDVDTLGNLDPA 382
H + PPKNW DV T NL A
Sbjct: 470 HKSQSEATLRPPKNWDDVTTAANLSSA 496
>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 29.1 bits (62), Expect = 3.1
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +1
Query: 25 EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTRRPHSDPPSLTVSNR 204
E ++ +P P++N R S S PT+S +S + K + + +RP S PPS T +
Sbjct: 31 EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPST 88
Query: 205 VSRTWT---PAS---VSTRRTPSVL 261
R + PAS +ST R P L
Sbjct: 89 PIRDLSIDLPASSRRLSTGRLPESL 113
>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 29.1 bits (62), Expect = 3.1
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +1
Query: 25 EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTRRPHSDPPSLTVSNR 204
E ++ +P P++N R S S PT+S +S + K + + +RP S PPS T +
Sbjct: 31 EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTSPST 88
Query: 205 VSRTWT---PAS---VSTRRTPSVL 261
R + PAS +ST R P L
Sbjct: 89 PIRDLSIDLPASSRRLSTGRLPESL 113
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = +3
Query: 510 RGRAQGHVLPPHRHVEGDPAAAHRRPLPVQGGRPLSCRPPTPAASWPTGRGIYH 671
RGR +G + PP P RP+P GG PL P A +P G G Y+
Sbjct: 487 RGRGRGIMWPPQM-----PLGRGIRPMPGMGGFPLGVMGPGDA--FPYGPGGYN 533
>At5g13590.1 68418.m01572 expressed protein
Length = 1190
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 130 PGKYSTA*RTRRPHSDPPSLTVSNRVSRTWTP-ASVSTRRTPSVLRVRRAV*PDHRG 297
PG S + R SD S + NR ++ S RR+PS +V R PDH G
Sbjct: 945 PGFRSRSPVRSRERSDGSSSSFRNRSQEEFSGHTDFSHRRSPSGYKVERMSSPDHSG 1001
>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 6 DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 119
DGC SA A D +E E G + KL+ S+ SLL+
Sbjct: 96 DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134
>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 6 DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 119
DGC SA A D +E E G + KL+ S+ SLL+
Sbjct: 96 DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134
>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
contains Pfam domain, PF01207: Dihydrouridine synthase
(Dus)
Length = 700
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 332 PPKNWG--DVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMED 484
PP +G D++TL + AG++V + + G+ EG+ F P + Y E+
Sbjct: 647 PPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHKSNAYDRAEN 699
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = +3
Query: 537 PPHRHVEGDPAAAHRRPLPVQGGRPLSCRPPTPAASWPTGRGIY 668
PP V P H P PV P PP P S P IY
Sbjct: 766 PPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPSPIY 809
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,606,235
Number of Sequences: 28952
Number of extensions: 305981
Number of successful extensions: 1190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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