Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0391.Seq
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 28 1.3
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 28 1.7
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 4.0
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 27 4.0
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 26 5.3
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 26 5.3
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 26 7.0
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 9.3
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = -3
Query: 240 VVSLADALVRRLENSFLTNKSKFSKFGEAPFT*FKLNAIHCSIKVSASILFSSHKFTHFI 61
V LAD R L N S + + F++ A+H + VS S+ + H +
Sbjct: 210 VARLADEFTRDSGLPDLENLSHVNVLLDIALDKFRIEALHANFSVSISL--RNKAIQHLL 267
Query: 60 KTSCSTFMPKNLNC 19
K+ + K +NC
Sbjct: 268 KSKIAANTDKAINC 281
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 397 YSPTVGSAKYASRTNAGTVVHSYGDEKLLQELGKAN 504
Y+P+V K A++ ++ YGDE + E+G N
Sbjct: 214 YAPSVLPQKEAAKKGYAQILWLYGDEDYITEVGTMN 249
>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 141 FKLNAIHCSIKVSASILFSSHKFTHFIKTSCSTFM 37
FKLN++ CS SILF+S FI + F+
Sbjct: 86 FKLNSLCCSFTCYPSILFASSLPIQFIALPPTVFL 120
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 244 TSCRKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNQNDIVPATYSPTVGSAK 423
TS + S +Y + +TS S S Y + T + ++ ++ V +Y P S+
Sbjct: 501 TSVQTSSAIYDSSSTSNIQSSS-SVYASSTGA---LSSNSLSSSTSSVSTSYIPNASSSV 556
Query: 424 YASRTNA 444
YAS T A
Sbjct: 557 YASSTEA 563
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 132 NAIHCSIKVSASILFSSHKFTHFIKTSCSTFMPKNLNCSVTNS 4
N ++K+S +L S F F CS F KN + S+T+S
Sbjct: 331 NEFQGTLKISDDVLKKSEHFMDF----CSNFKGKNNSSSITSS 369
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 53 DVLIKCVNLCEENN-IDAETFIEQWMAFSLNYVNGASPNLENLDLFVRK 196
D+ ++ C+E +DA I+ W++ L++ N+ + F+RK
Sbjct: 148 DLTSSILDACDEEILVDARNQIKNWLSSELSHSTSKYLNITTSNRFIRK 196
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 508 SCSLYLILVVISHLHKNGPPCLRLFSTRTSLN 413
SC L+ + S KN P CL LFS+ +N
Sbjct: 118 SCGLFFVSYFFSL--KNNPFCLMLFSSHEKMN 147
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +1
Query: 292 PPDSEVLSSYVAVTPKRVKIEKDATTNQNDIVPATYSPTVGSAKYASRTNAGTVVHSY 465
P D +++ + VTP+ + ++ +QN+ YS S+ Y + +A + SY
Sbjct: 124 PDDRALMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNFEDASSPQSSY 181
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 203 SKRRTNASAKETTRPAAVKVLPFMEQ 280
+K++ ++K TT+ + V V+ F+EQ
Sbjct: 33 NKKKNRKASKNTTKKSTVSVVNFLEQ 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,405,586
Number of Sequences: 5004
Number of extensions: 74810
Number of successful extensions: 231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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