Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0391.Seq
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0056 - 11936264-11939677                                         31   0.78 
06_01_0997 - 7752634-7753128,7753280-7753708,7754403-7755196,775...    29   5.5  
08_01_0186 - 1561695-1561958,1562041-1562183,1562260-1562326,156...    28   9.6  
04_04_0765 - 27910189-27912393,27912521-27912598                       28   9.6  
02_05_1221 - 35023734-35023868,35024002-35024217,35024349-350246...    28   9.6  
01_06_1096 + 34502668-34503036,34504294-34505317,34505388-34505656     28   9.6  

>09_03_0056 - 11936264-11939677
          Length = 1137

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
 Frame = +2

Query: 59  LIKCVNLC----EENNIDAETFIEQWMAFSLNYVNGASPNL----ENLDLFVRKEF 202
           L +C + C    + +  DAET ++ W+A  L   NG+ P +    E  D  VR+ F
Sbjct: 568 LKRCFSFCSMYPKSHEFDAETLVDSWVAVGLVVSNGSVPAVDIGHEYFDQLVRRSF 623


>06_01_0997 -
           7752634-7753128,7753280-7753708,7754403-7755196,
           7755247-7755574
          Length = 681

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 262 LTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNQ 375
           +T  G +   PP+S  L SY  +  K  +I KDA++N+
Sbjct: 550 VTSIGEQMQLPPESLKLISYTNLCTKFTQIAKDASSNE 587


>08_01_0186 -
           1561695-1561958,1562041-1562183,1562260-1562326,
           1562417-1562529,1562603-1562671,1563831-1563870,
           1563965-1564035,1565872-1566027,1566104-1566152,
           1566228-1567631
          Length = 791

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 349 IEKDATTNQNDIVPATYSPTVGSAKYASRTN 441
           +E+D     ND+ P TY P V  ++ A R++
Sbjct: 489 VEEDVDIGGNDLPPLTYPPAVFESETAERSS 519


>04_04_0765 - 27910189-27912393,27912521-27912598
          Length = 760

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +1

Query: 277 AKATSPPDSEVLSSYVAVTPKRVKIEKDATTNQNDIVPATYSPTVGSAKYAS 432
           A A   PDS V +  V  +P  V        +  DIV A+ SP    A + S
Sbjct: 410 APAVVAPDSPVAAVAVFSSPTAVAASSSPAASPVDIVAASSSPAAAVAAFGS 461


>02_05_1221 -
           35023734-35023868,35024002-35024217,35024349-35024675,
           35024845-35025218,35025560-35025647,35025767-35025910,
           35026053-35026178,35026264-35026412,35026539-35026644,
           35026757-35026900,35027018-35027194,35027304-35027453,
           35027570-35027788
          Length = 784

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 340 RVKIEKDATTNQNDIVPATYSPTVGSAKYASRTNA 444
           R+++ + ++ N N+ +P  YSP + SA +  R  A
Sbjct: 118 RLRLVEVSSMNNNEALPLVYSPEIISAYWGKRPRA 152


>01_06_1096 + 34502668-34503036,34504294-34505317,34505388-34505656
          Length = 553

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 498 SEQLNDVLSLKITQVPNDDDEVYTKAMLGFELLHEKAST 614
           S+ +N V+S  + Q  ND +++  K  +GF+ LHE  ST
Sbjct: 250 SDTINGVIS-SVDQFSNDSEKL--KQAVGFDYLHEANST 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,218,663
Number of Sequences: 37544
Number of extensions: 446323
Number of successful extensions: 1097
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)