Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0391.Seq
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.004
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)             33   0.26 
SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022)                   29   4.2  
SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)                29   4.2  
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    29   4.2  
SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)                29   4.2  
SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)                  29   4.2  
SB_35551| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4)                       29   5.6  
SB_16546| Best HMM Match : SH2 (HMM E-Value=6.4)                       29   5.6  
SB_9316| Best HMM Match : SH2 (HMM E-Value=6.4)                        29   5.6  
SB_7414| Best HMM Match : SH2 (HMM E-Value=6.4)                        29   5.6  
SB_52988| Best HMM Match : RVT_1 (HMM E-Value=2.5)                     29   5.6  
SB_48446| Best HMM Match : Pkinase (HMM E-Value=1.2e-05)               29   5.6  
SB_47851| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_47163| Best HMM Match : SH2 (HMM E-Value=6.4)                       29   5.6  
SB_24694| Best HMM Match : RVT_1 (HMM E-Value=0.99)                    29   5.6  
SB_6463| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)                  29   5.6  
SB_43796| Best HMM Match : SH2 (HMM E-Value=6.4)                       28   7.4  
SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3)             28   9.8  
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.8  

>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +2

Query: 2   EELVTEQFKFFGINVEQ-DVLIKCVNLCEENNIDAETFIEQWMAFSLNYVNGASPNLENL 178
           +E +  +F+ F I ++   +L K   +C    ++A    E+W+AFS   +  + P L  L
Sbjct: 189 DEEIEREFEEFSITIDDVGILDKLKEICSSCRLNASQLCEEWVAFS-QALEDSDPTLATL 247

Query: 179 DLFVRKEFSKR 211
           + F RK   KR
Sbjct: 248 EKFERKGALKR 258



 Score = 31.5 bits (68), Expect = 0.80
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 585 FELLHEKASTFDNHIRYISQYIMKKAGVKESTSVRHKTQTNVYVAGRIECDADARLNA 758
           F+   +K +  +  I  +++ +  + G++E       +Q  V V GRI CDA  +LNA
Sbjct: 349 FQKQVDKENVLNEMIDEMAEKLKIQHGIEEYAHTTSPSQGEVTVVGRICCDAVGKLNA 406



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 388 PATYSPTVG--SAKYASRTNAGTVVHS 462
           PA++SP     S KY SR NAG VV S
Sbjct: 286 PASFSPAAATPSLKYGSRHNAGDVVCS 312


>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
          Length = 1086

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = +1

Query: 241  TTSCRKSLT-VYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNQNDIVPATYSPTVGS 417
            TT+C  + T    A +     S   +++   +P  V  +  AT+ Q       Y+   G 
Sbjct: 734  TTTCGAAATKTTSAISQGASTSLQATTHSVSSPTNVTTQDGATSRQCTTATVRYTVPSGY 793

Query: 418  AKYASRTNAGTVVHSYGDEKLLQELGKANS*MMCSV 525
             K  S  +AGTVV+ YG  K  +   ++    MCSV
Sbjct: 794  TKL-SDLSAGTVVNVYGVVKFFKSPWQSRGTDMCSV 828


>SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022)
          Length = 270

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKESTSVRHKTQTNVY 713
           +LG  L  + + T+DNH++YI   I K+ G+ + T      +T  Y
Sbjct: 192 LLGIRL--DNSLTWDNHLKYIHNKISKRLGLLKRTKKFLSARTLFY 235


>SB_58697| Best HMM Match : Chromo (HMM E-Value=5.5e-09)
          Length = 590

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 298 DSEVLSSYVAVTPKRVKIEKDATTNQNDIVPATYSPT 408
           D + L S++  T + +K  +DA TNQ+  VP+T   T
Sbjct: 333 DEDDLPSHIFTTVEPLKQAEDALTNQSTSVPSTSQTT 369


>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 316 SYVAVTPKRVKIEKDATTNQNDIVPATYSPTVGSAKYASRTNAGTVVHSYGDEKLLQEL 492
           S++  +P++     D   N   +VPAT S    ++ Y+S T    ++H      L Q L
Sbjct: 438 SFIGSSPQKETALTDKDGNFIKLVPATTSQQQNNSHYSSNTKKSQLIHYTKQIPLTQNL 496


>SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)
          Length = 333

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 194 KEFSKRRTNASAKETTRPAAVKVLPFMEQKPLRLQTVKYCQVM 322
           K+FS     A  K  T P  +   P+M+ KPLR+QT   C+++
Sbjct: 214 KDFSHEHDYALLK-LTEPTNI---PYMDIKPLRIQTGTQCKIL 252


>SB_22238| Best HMM Match : CMAS (HMM E-Value=3.5e-15)
          Length = 1605

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 513  DVLSLKITQVP--NDDDEVYTKAMLGFELLHEKASTFDNHIRYISQ 644
            DV +L ++  P  NDDD+ +T  ++ FE+ H    T ++  R + +
Sbjct: 1132 DVQTLSLSDPPPSNDDDDPFTAKLMSFEVRHLVQDTTNSLFRRLEK 1177


>SB_35551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKEST 680
           +LG  L  + + T+DNH++YI   I K+ G+ + T
Sbjct: 176 LLGIRL--DNSLTWDNHLKYIHNKISKRLGLLKRT 208


>SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 252

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKEST 680
           +LG  L  + + T+DNH++YI   I K+ G+ + T
Sbjct: 81  LLGIRL--DNSLTWDNHLKYIHNKISKRLGLLKRT 113


>SB_16546| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 124

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKEST 680
           +LG  L  + + T+DNH++YI   I K+ G+ + T
Sbjct: 44  LLGIRL--DNSLTWDNHLKYIHNKISKRLGLLKRT 76


>SB_9316| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 169

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKEST 680
           +LG  L  + + T+DNH++YI   I K+ G+ + T
Sbjct: 44  LLGIRL--DNSLTWDNHLKYIHNKISKRLGLLKRT 76


>SB_7414| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 323

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKEST 680
           +LG  L  + + T+DNH++YI   I K+ G+ + T
Sbjct: 158 LLGIRL--DNSLTWDNHLKYIHNKISKRLGLLKRT 190


>SB_52988| Best HMM Match : RVT_1 (HMM E-Value=2.5)
          Length = 277

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKEST 680
           +LG  L  + + T+DNH++YI   I K+ G+ + T
Sbjct: 179 LLGIRL--DNSLTWDNHLKYIHNKISKRLGLLKRT 211


>SB_48446| Best HMM Match : Pkinase (HMM E-Value=1.2e-05)
          Length = 228

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKEST 680
           +LG  L  + + T+DNH++YI   I K+ G+ + T
Sbjct: 148 LLGIRL--DNSLTWDNHLKYIHNKISKRLGLLKRT 180


>SB_47851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 893

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKEST 680
           +LG  L  + + T+DNH++YI   I K+ G+ + T
Sbjct: 795 LLGIRL--DNSLTWDNHLKYIHNKISKRLGLLKRT 827


>SB_47163| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 172

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKEST 680
           +LG  L  + + T+DNH++YI   I K+ G+ + T
Sbjct: 44  LLGIRL--DNSLTWDNHLKYIHNKISKRLGLLKRT 76


>SB_24694| Best HMM Match : RVT_1 (HMM E-Value=0.99)
          Length = 309

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKEST 680
           +LG  L  + + T+DNH++YI   I K+ G+ + T
Sbjct: 179 LLGIRL--DNSLTWDNHLKYIHNKISKRLGLLKRT 211


>SB_6463| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
          Length = 675

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKEST 680
           +LG  L  + + T+DNH++YI   I K+ G+ + T
Sbjct: 577 LLGIRL--DNSLTWDNHLKYIHNKISKRLGLLKRT 609


>SB_43796| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 352

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 576 MLGFELLHEKASTFDNHIRYISQYIMKKAGVKEST 680
           +LG  L  +   T+DNH++YI   I K+ G+ + T
Sbjct: 266 LLGIRL--DNTLTWDNHLKYIHNKISKRLGLLKRT 298


>SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3)
          Length = 586

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 481 VISHLHKNGPPCLRLFSTRTSLNRRSVNKLQELC-HSDLS 365
           VI H HK   P     + R SL RR+ N L EL  H D S
Sbjct: 381 VIGHYHKEKFPSYLANNVRDSLIRRAQNLLSELVGHLDRS 420


>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
 Frame = -2

Query: 781  RTLKHHNFAFNLASASHSIRPATYTFVCVLCLTEVLSFTPAFFIMYCDMYRM*LS--NVL 608
            R L H   A +L +A    R   +     + L+ +L +      +Y  +  + LS  N++
Sbjct: 942  RRLVHSQAAIHLPAAQQERRSKRFRSAIRMVLSSLLVYAVCVTPLYVYLSIVTLSELNLV 1001

Query: 607  AFSWRSSKPNIAFV*TSSSSLGTCVIFKLSTSFSCSLYLILVV 479
              SW+     + F+   + SLG  V F     F   L  I+ V
Sbjct: 1002 TISWKPRGFLLYFIFYLNYSLGPIVYFVFLDEFRLPLRSIICV 1044


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,317,469
Number of Sequences: 59808
Number of extensions: 549393
Number of successful extensions: 1325
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)