Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0391.Seq
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.2  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   4.2  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   4.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   4.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.8  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   9.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 120 CSIKVSASILFSSHKFTHFIKTSCSTFMPKNLNCSVTN 7
           CS+K     +  S+  T  + T C+T       CS T+
Sbjct: 332 CSVKREKIKISVSYPSTETLNTKCNTLERTPSKCSQTS 369


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 552 DDEVYTKAMLGFELLHEKAS 611
           DDE Y +A +GF+ +  K S
Sbjct: 103 DDEYYKRAPMGFQGMRGKKS 122


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 552 DDEVYTKAMLGFELLHEKAS 611
           DDE Y +A +GF+ +  K S
Sbjct: 103 DDEYYKRAPMGFQGMRGKKS 122


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 552 DDEVYTKAMLGFELLHEKAS 611
           DDE Y +A +GF+ +  K S
Sbjct: 103 DDEYYKRAPMGFQGMRGKKS 122


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -3

Query: 279 CSINGKTFTAAGRVVSLADALVRRLENSFLTNKSKFSKFGEAP-FT*FKLN 130
           C +NG T    G     A  +    +NSF   +   S F   P +T F +N
Sbjct: 193 CEVNGSTLVYIGDNEGFALIIYNNSDNSF--QRLTSSTFASDPRYTTFTIN 241


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -3

Query: 624 DYQTYWLFRGEVQNPTSPLC 565
           +Y+  W+    + N T P+C
Sbjct: 136 EYERLWVLDSGLVNNTQPMC 155


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -3

Query: 726 YVQQRIRLSVFCV*LRYFPLHPPSSLCTAIC 634
           Y+   +RL++  +  +     PP S+C+  C
Sbjct: 561 YLSGELRLNMSAIQFKLGHPEPPESVCSLPC 591


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 552 DDEVYTKAMLGFELLHEK 605
           DDE Y +A +GF+ +  K
Sbjct: 104 DDEYYKRAPMGFQGMRGK 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,486
Number of Sequences: 438
Number of extensions: 4499
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)