Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0391.Seq
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67630.1 68414.m07712 DNA polymerase alpha subunit B family c...    31   0.86 
At4g32330.2 68417.m04600 expressed protein                             31   1.1  
At4g32330.1 68417.m04599 expressed protein                             31   1.1  
At5g49780.1 68418.m06165 leucine-rich repeat transmembrane prote...    30   2.0  
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ...    30   2.0  
At5g10180.1 68418.m01178 sulfate transporter identical to sulfat...    29   4.6  
At1g54115.1 68414.m06169 cation exchanger, putative                    28   6.1  
At5g65470.1 68418.m08233 expressed protein contains Pfam PF03138...    28   8.0  
At3g57810.2 68416.m06445 OTU-like cysteine protease family prote...    28   8.0  
At3g57810.1 68416.m06444 OTU-like cysteine protease family prote...    28   8.0  

>At1g67630.1 68414.m07712 DNA polymerase alpha subunit B family
           contains Pfam profile: PF04058 DNA polymerase alpha
           subunit B
          Length = 620

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 2   EELVTEQFKFFG-INVEQDVLIK-CVNLCEENNIDAETFIEQWMAFSLN 142
           +E +  +FK  G I VE+D ++K CV LC   ++     +  W  + LN
Sbjct: 4   DEEIKNEFKRSGFILVEEDEILKRCVTLCINYSLKPSDLVSSWELYHLN 52


>At4g32330.2 68417.m04600 expressed protein
          Length = 436

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 253 RKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNQNDIVPATYSPTVGSAKYAS 432
           RKSL    ++ T  PD +   +  A+ P +V+ EK       + V  T  PT   A+   
Sbjct: 341 RKSLPRLPSQKTVLPDGKPAPAKAAIIPAKVRPEKKKLEKDAETVNQTSHPTEEEAQVTV 400

Query: 433 RTNA 444
            +NA
Sbjct: 401 SSNA 404


>At4g32330.1 68417.m04599 expressed protein
          Length = 437

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 253 RKSLTVYGAKATSPPDSEVLSSYVAVTPKRVKIEKDATTNQNDIVPATYSPTVGSAKYAS 432
           RKSL    ++ T  PD +   +  A+ P +V+ EK       + V  T  PT   A+   
Sbjct: 342 RKSLPRLPSQKTVLPDGKPAPAKAAIIPAKVRPEKKKLEKDAETVNQTSHPTEEEAQVTV 401

Query: 433 RTNA 444
            +NA
Sbjct: 402 SSNA 405


>At5g49780.1 68418.m06165 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1006

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 707 VCLCFVSN*GTFLYTRLLHYVLR 639
           +C CFVS    FLY+RL H V +
Sbjct: 27  LCKCFVSEEAVFLYSRLCHNVCK 49


>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 538 CVIFKLSTSFSCSLYLILVVISHLHKNGPPCLRLFSTRTSLN 413
           C I K + +  CS+ L L+ ISH+ K+    L LF TR  ++
Sbjct: 172 CSICKFNLNLPCSMMLPLLTISHM-KSHEHTLTLFCTRLPMS 212


>At5g10180.1 68418.m01178 sulfate transporter identical to sulfate
           transporter [Arabidopsis thaliana] GI:2114104
          Length = 677

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 763 NFAFNLASASHSIRPATYTFVCVLCLTEVLSFTP 662
           NFA    +A  +I  A   FV + CLT +L +TP
Sbjct: 426 NFAAGCETAMSNIVMAVTVFVALECLTRLLYYTP 459


>At1g54115.1 68414.m06169 cation exchanger, putative
          Length = 644

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/87 (27%), Positives = 37/87 (42%)
 Frame = -1

Query: 698 CFVSN*GTFLYTRLLHYVLRYVSNVIIKRTGFFVEKFKTQHRLCVNFVIVIRHLRDFQTE 519
           CF+ +   FL+T +   V+  V  V +     FV  +     L     I+ +H R  + +
Sbjct: 241 CFIRDLSFFLFTLVALMVILMVGKVTVGIAIAFVSIYVFYASLVAANEILRKHSRRLKLD 300

Query: 518 HIIQLFALPNSCSNFSSP*EWTTVPAF 438
            I  L  LP   S FSSP     +P +
Sbjct: 301 SITPL--LPMQGSVFSSPSVEEDIPMY 325


>At5g65470.1 68418.m08233 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 504

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 279 CSINGKTFTAAGRVVSLADALVRRLEN-SFLTNKSK 175
           C +N +       + SL DALV RL N S+ +NK +
Sbjct: 228 CKVNFQALRFVPHITSLGDALVSRLRNPSWRSNKEQ 263


>At3g57810.2 68416.m06445 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 317

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -3

Query: 366 RRVFFDFDSLGRYGNIT*QYFTVWRRSGFCSINGKTFTAAGRVVSLADALVRRLENSFLT 187
           +RV+ D+  +G  G+    + +V    GFC  +GK          LAD L  R+ + F+ 
Sbjct: 162 KRVYTDYSIIGIPGDGRCLFRSV--AHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQ 219

Query: 186 NKSKFSKFGEAPF 148
            + +   F E  F
Sbjct: 220 RRQETEWFVEGDF 232


>At3g57810.1 68416.m06444 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 317

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -3

Query: 366 RRVFFDFDSLGRYGNIT*QYFTVWRRSGFCSINGKTFTAAGRVVSLADALVRRLENSFLT 187
           +RV+ D+  +G  G+    + +V    GFC  +GK          LAD L  R+ + F+ 
Sbjct: 162 KRVYTDYSIIGIPGDGRCLFRSV--AHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQ 219

Query: 186 NKSKFSKFGEAPF 148
            + +   F E  F
Sbjct: 220 RRQETEWFVEGDF 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,502,245
Number of Sequences: 28952
Number of extensions: 377435
Number of successful extensions: 1048
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)