Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0388.Seq
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    26   7.0  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   7.0  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   9.3  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 780 DSVDAVGQ*ADYPQVTPPLTGIRMLFTKQITQTKPSRYSRFSVATYIT 637
           D V  V +   YPQ +  L   R L T    + KP+  S  + AT ++
Sbjct: 343 DIVHGVQEKGKYPQASEILDATRFLKTDTNNEQKPTNNSTITKATTLS 390


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/46 (23%), Positives = 27/46 (58%)
 Frame = +2

Query: 299 FNITFGFLMYSRH*IYIFNGIHIIY*LNKSKKAYIGAARHSLISNC 436
           FN+ +G+L+ +++ +Y+    + +  L++   A+I  A   L++ C
Sbjct: 70  FNLGYGWLLLTKYPVYVLLSTYYLTPLSQIAWAFIIDAISLLVARC 115


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -2

Query: 246 STSNCQCCRRETKVSKIVCDSLYFSSLARR 157
           +T  C  CRR+   +K++C  +   S  ++
Sbjct: 239 ATQKCPVCRRKVHPNKVICLEMMLGSQKKK 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,511
Number of Sequences: 5004
Number of extensions: 58871
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)