Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0388.Seq
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1197 - 11372764-11373174                                         28   7.3  
05_04_0277 + 19684956-19686137                                         28   9.6  

>07_01_1197 - 11372764-11373174
          Length = 136

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 243 TSNCQCCRRETKVSKIVCDSLYFS 172
           T++ QCC R +   K++C  L FS
Sbjct: 111 TNDLQCCSRPSSPGKLICKKLGFS 134


>05_04_0277 + 19684956-19686137
          Length = 393

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 722 PELGCYLQNKSHKRNRL-GTPDSVLPRTSR 636
           P L   LQ  S   NRL GT DSVLPR +R
Sbjct: 207 PNLPSTLQYLSLSANRLTGTVDSVLPRLTR 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,232,697
Number of Sequences: 37544
Number of extensions: 327944
Number of successful extensions: 535
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)