Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0388.Seq
         (784 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113014-1|AAI13015.1|  245|Homo sapiens ring finger protein 151...    30   8.2  
BC029501-1|AAH29501.2|  244|Homo sapiens RNF151 protein protein.       30   8.2  

>BC113014-1|AAI13015.1|  245|Homo sapiens ring finger protein 151
           protein.
          Length = 245

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -2

Query: 309 VILKVQSLPMNHL-CKQ*TL--LDSTSNCQCCRRETKVSKIV 193
           V+ +   LP +H+ CK+  L  L     C CCR+E K  K+V
Sbjct: 26  VLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVKRKKVV 67


>BC029501-1|AAH29501.2|  244|Homo sapiens RNF151 protein protein.
          Length = 244

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -2

Query: 309 VILKVQSLPMNHL-CKQ*TL--LDSTSNCQCCRRETKVSKIV 193
           V+ +   LP +H+ CK+  L  L     C CCR+E K  K+V
Sbjct: 25  VLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKEVKRKKVV 66


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,449,640
Number of Sequences: 237096
Number of extensions: 1930139
Number of successful extensions: 3110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3110
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)