Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0385.Seq
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 29 0.76
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 29 1.0
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.3
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 27 2.3
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 27 2.3
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 27 3.1
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 7.1
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 26 7.1
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 25 9.4
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 25 9.4
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 9.4
>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 29.1 bits (62), Expect = 0.76
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 598 YFVGFQN-SEVMINRDNWGHSYCDVRGEIL 684
Y VG+ N + ++++ WGHS+ +V E+L
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELL 171
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 27 CLINFRW*F---LRLPWLSRVTGNQGSIPEREPEKRLP 131
C+IN W LRL +L + NQ S E++ EKR+P
Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308
>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 27.5 bits (58), Expect = 2.3
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = -3
Query: 533 EHSNLFKVNCRPTSTLTEEHRDRILILNRRFLERRLTDDMSANVSVSPRMRCTDSAAHKC 354
E S+ C P ++ + +RILI R F S + + +R AA KC
Sbjct: 23 ERSSSVFFECNPCYSIEKLKSNRILIAVRLF--SFAFSSFSTTLRI---LRDFIIAASKC 77
Query: 353 NYELFNRNNFSIRYWSWNYR 294
+E FSI + S+N++
Sbjct: 78 EFEKIWSTTFSISFLSFNFK 97
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 152 RANYPLPAREVVTKNNDT 205
+AN P+P EVVT+NN T
Sbjct: 199 KANIPVPTSEVVTENNVT 216
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 567 TKYSSSIFSPL*AL*FVQSKLSAHLDTHRRAPR*DFD 457
T + + I SPL Q+ LS H+ TH AP FD
Sbjct: 141 TDFEAGIDSPL----LCQASLSTHVKTHNNAPLTSFD 173
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 326 FSIRYWSWNYRGCWHQTCPPIVPRKIFKVYSFRLR 222
F Y WNY G +Q P +P KV+ LR
Sbjct: 96 FKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLR 130
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 280 RLALQLFLVKYLKCTHSDY 224
R+ L LF Y KC H DY
Sbjct: 1125 RIVLHLFSFFYWKCQHDDY 1143
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 140 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 42
P MW P N+ + YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 138 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 37
L ++ S+ P + PD P T+ V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 680 FLDRRKTNISETFAKGVFINQERK 751
F K + SETF++ V +NQE K
Sbjct: 147 FFTSSKNDDSETFSRSVLMNQELK 170
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 9.4
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = -1
Query: 187 HYLPCREWVICAPA 146
HY+PC+ W++ P+
Sbjct: 455 HYIPCQSWLVWYPS 468
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,516
Number of Sequences: 5004
Number of extensions: 63255
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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