Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0385.Seq
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0861 + 8153108-8153266,8154633-8155136 30 1.8
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 29 3.2
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963... 29 4.2
06_02_0092 - 11624905-11625123,11625206-11625292,11625767-116258... 28 9.7
04_03_0946 + 20975955-20976095,20976189-20976330,20976449-209765... 28 9.7
03_04_0201 - 18409088-18409306,18409389-18409475,18409950-184100... 28 9.7
01_05_0005 - 16886553-16886946,16887079-16887404 28 9.7
>12_01_0861 + 8153108-8153266,8154633-8155136
Length = 220
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -2
Query: 231 PITRPRKSPVSLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVV 58
P ++ R +P SL + G RL S +VA+ + P P S+P D P TT+ +
Sbjct: 86 PSSQLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVAL 145
Query: 57 AE 52
E
Sbjct: 146 IE 147
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +3
Query: 411 GHIVGEPAF*KTPVQYQNPIAVLFG---ECRGGPTIYFEQIRV 530
G VG+P F + Q P+ V+ G GG T+Y E +V
Sbjct: 831 GDYVGKPVFQAERIYEQTPVGVVMGLAWTAMGGSTLYIETTKV 873
>05_05_0322 +
24094831-24094992,24095147-24095216,24096184-24096307,
24096403-24096502,24096598-24096825,24096916-24097041,
24097092-24097376,24097490-24097648,24097751-24097929,
24098078-24098210
Length = 521
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -3
Query: 440 LERRLTDDMSANVSVSPRMR 381
LERR TD MS+ V V+P+MR
Sbjct: 283 LERRPTDYMSSQVEVNPKMR 302
>06_02_0092 -
11624905-11625123,11625206-11625292,11625767-11625889,
11625992-11626351,11626427-11626511,11626603-11626661,
11627173-11627265,11627360-11627464,11627539-11627636,
11627811-11627916,11628009-11628131,11628986-11629021,
11629113-11629310,11629415-11629612,11629917-11630056,
11630181-11630322,11630416-11630556
Length = 770
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 201 SLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTM 64
++ F T S +GS F+R+ + DVV + +A +P LP T +
Sbjct: 428 AIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDP-VQLPATVI 472
>04_03_0946 +
20975955-20976095,20976189-20976330,20976449-20976588,
20976893-20977090,20977195-20977392,20977484-20977519,
20978374-20978496,20978589-20978694,20978869-20978966,
20979041-20979145,20979240-20979332,20979842-20979900,
20979984-20980068,20980144-20980503,20980606-20980728,
20981203-20981289,20981372-20981590
Length = 770
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 201 SLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTM 64
++ F T S +GS F+R+ + DVV + +A +P LP T +
Sbjct: 428 AIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDP-VQLPATVI 472
>03_04_0201 -
18409088-18409306,18409389-18409475,18409950-18410072,
18410175-18410534,18410610-18410694,18410780-18410838,
18411350-18411442,18411537-18411641,18411716-18411813,
18411988-18412093,18412186-18412308,18413163-18413198,
18413290-18413487,18413592-18413789,18414094-18414233,
18414356-18414497,18414591-18414731
Length = 770
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 201 SLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTM 64
++ F T S +GS F+R+ + DVV + +A +P LP T +
Sbjct: 428 AIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDP-VQLPATVI 472
>01_05_0005 - 16886553-16886946,16887079-16887404
Length = 239
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 335 RNNFSIRYWSWNYRGC 288
R+N S RYW W GC
Sbjct: 90 RSNSSFRYWRWQPHGC 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,109,618
Number of Sequences: 37544
Number of extensions: 455824
Number of successful extensions: 1228
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -