Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0385.Seq
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67270.1 68418.m08480 microtubule-associated EB1 family prote...    31   0.87 
At1g65320.1 68414.m07407 CBS domain-containing protein contains ...    29   2.7  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   4.6  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   4.6  

>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profiles PF00307: Calponin homology (CH)
           domain, PF03271: EB1 protein
          Length = 329

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 500 PTSTLTEEHRDRILILNRRFLERRLTDDMSANVSVSPRMRCTDSAAHKCN 351
           P +  +EE R+ +    +R L   L  D++A  ++SPR R +D++  KC+
Sbjct: 272 PIAEGSEERRNSVTESQKRKLIVNLDVDVAAITTLSPRQRLSDASDVKCS 321


>At1g65320.1 68414.m07407 CBS domain-containing protein contains
           Pfam profile PF00571: CBS domain
          Length = 425

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 234 IPITRPRKSPVSLFFVTTSRAGSG*FARLLPSLDVVA-VSQAPSPESNPDSPLPVTTMVV 58
           IP+ R R +P    FV  S      F  +L SLD+VA +++    +      +PV+ +V 
Sbjct: 44  IPVWRKRTTPSLPGFVENSEMRQQRFVGILNSLDIVAFLAKTECLQEEKAMKIPVSEVVS 103

Query: 57  AETTI 43
            + T+
Sbjct: 104 PDNTL 108


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 153 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 52
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 144 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 37
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,573,182
Number of Sequences: 28952
Number of extensions: 347146
Number of successful extensions: 839
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)