Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0380.Seq
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036...    29   4.0  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    29   5.2  
02_04_0658 - 24793219-24794109                                         28   9.2  

>01_06_0986 -
           33602714-33602741,33603037-33603146,33603401-33603601,
           33604605-33604697,33604937-33605182,33606007-33606372,
           33606459-33606599,33607170-33607526
          Length = 513

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 6   SKWHGKCIYFW*RISQLPSRFSVGLSGRRIGGQVHKFDNKVHRFLCMD 149
           ++W G C Y     ++    F  G  G   GG +H   NK H + C+D
Sbjct: 87  AEWKGACFYD----NRAWMEFHNGTDGGLGGGTLHLETNKAHSWTCID 130


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 153 SHPCKEIYEPCCQIYVPVPQFVCPIIPRKNVMVIVKSFTKSKCICHA 13
           + PC+E   PC ++  P     CP+    N     K+  K  C C A
Sbjct: 571 AEPCEECNLPCQRVREPPCSHPCPLPCHLNDCPPCKALVKRPCHCGA 617


>02_04_0658 - 24793219-24794109
          Length = 296

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 533 VILLSKAFVYFIEYEFLNAI*AFLSYIKIISPYWALLENLIVFEI 667
           +++++    Y + + F   + A L +I I+ PYW +      FEI
Sbjct: 237 LMIMTLGVTYQLHHMFFILLLALLVFISIVCPYWLIRIQEYKFEI 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,097,995
Number of Sequences: 37544
Number of extensions: 326799
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)