Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0380.Seq
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0) 72 6e-13
SB_2286| Best HMM Match : Cu_bind_like (HMM E-Value=6.6) 30 2.3
SB_49228| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_45746| Best HMM Match : FA_desaturase (HMM E-Value=0) 29 3.1
SB_36820| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_12718| Best HMM Match : rve (HMM E-Value=0.0031) 28 7.1
SB_3750| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9) 28 9.4
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_43216| Best HMM Match : RSD-2 (HMM E-Value=2.3) 28 9.4
SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9) 28 9.4
>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
Length = 268
Score = 71.7 bits (168), Expect = 6e-13
Identities = 33/62 (53%), Positives = 39/62 (62%)
Frame = +1
Query: 31 TFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASTNIIEKRALR 210
T GEG+HNYHH FP DY A E G R +N++TR ID +A MG D K I KR +R
Sbjct: 196 TSGEGYHNYHHTFPQDYAASEFGTR-LNMSTRLIDMWAAMGLVSDRKVVPKETIRKRMMR 254
Query: 211 TG 216
TG
Sbjct: 255 TG 256
>SB_2286| Best HMM Match : Cu_bind_like (HMM E-Value=6.6)
Length = 326
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 13 GMANAFTF--GEGFHNYHHVFPWDYRADE 93
G+ + F F GEG+HN H + +D ADE
Sbjct: 115 GLGDVFVFYPGEGYHNVHVIRGYDTAADE 143
>SB_49228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 13 GMANAFTF--GEGFHNYHHVFPWDYRADELG 99
G+ + F F GEG+ N H + +D ADE+G
Sbjct: 208 GLGDVFVFYPGEGYRNVHVIRGYDTAADEVG 238
>SB_45746| Best HMM Match : FA_desaturase (HMM E-Value=0)
Length = 331
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 13 GMANAFTFGEGFHNYHHVFP 72
G N TF G+HN HH FP
Sbjct: 247 GPLNYLTFNVGYHNEHHDFP 266
>SB_36820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 13 GMANAFTF--GEGFHNYHHVFPWDYRADE 93
G+ N F F GEG+ N H + +D ADE
Sbjct: 65 GLGNVFVFYPGEGYRNVHVIRGYDTAADE 93
>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
Length = 1667
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 13 GMANAFTF--GEGFHNYHHVFPWDYRADE 93
G+++ F F GEG+ N H + +D ADE
Sbjct: 124 GLSDVFVFYPGEGYRNVHVILGYDTAADE 152
>SB_3750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 13 GMANAFTF--GEGFHNYHHVFPWDYRADELGDRY 108
G+ + F F GEG+ N H + +D ADE Y
Sbjct: 93 GLGDVFVFYPGEGYRNVHVIRGYDTAADEYPSHY 126
>SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9)
Length = 499
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 13 GMANAFTF--GEGFHNYHHVFPWDYRADELGDRYINLTTRFID 135
G+ + F F GEG+ N H + +D ADE ++NL FID
Sbjct: 214 GLGDVFVFYPGEGYRNVHVIRGYDTAADEYSS-HLNL---FID 252
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 159 SPSH-PCKEIYEPCCQIYVPVPQFVCPIIPR 70
+PS PC E Y PC + Y+P + P R
Sbjct: 620 APSQSPCTERYTPCTERYIPCTERYTPCTER 650
>SB_43216| Best HMM Match : RSD-2 (HMM E-Value=2.3)
Length = 477
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 13 GMANAFTF--GEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYD 165
G+ + F F GEG+ N H + +D ADE ++NL F+ GW Y+
Sbjct: 62 GLGDVFVFYSGEGYRNVHVIRGYDTAADEY-PSHLNL-------FSDEGWTYN 106
>SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 13 GMANAFTF--GEGFHNYHHVFPWDYRADELGDRYINLTTRFID 135
G+ + F F GEG+ N H + +D ADE ++NL FID
Sbjct: 314 GLGDVFVFYPGEGYRNVHVIRGYDTAADEYSS-HLNL---FID 352
>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2235
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +1
Query: 73 WDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASTN----IIEKRALRTGDGTYKRPN 240
W +DELG ++L+ + +W+ + TAST+ I + LR P+
Sbjct: 842 WRLLSDELGSSMVSLSVATTPYSSWIHSVFSWMTASTSATDPIASLKPLRFATSCRTPPS 901
Query: 241 GMN 249
+N
Sbjct: 902 SLN 904
>SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 566
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 13 GMANAFTF--GEGFHNYHHVFPWDYRADELGDRYINLTT 123
G+ + F F GEG+ N H + +D ADE ++NL T
Sbjct: 451 GLGDVFVFYPGEGYRNVHVIRGYDTAADEY-PSHLNLFT 488
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,343,985
Number of Sequences: 59808
Number of extensions: 397620
Number of successful extensions: 982
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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