Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0380.Seq
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82073-6|CAB04924.1| 333|Caenorhabditis elegans Hypothetical pr... 60 2e-09
AF260242-1|AAF97548.1| 333|Caenorhabditis elegans palmitoyl-CoA... 60 2e-09
Z95123-2|CAB08356.1| 339|Caenorhabditis elegans Hypothetical pr... 55 6e-08
AF260244-1|AAF97550.1| 339|Caenorhabditis elegans stearoyl-CoA ... 55 6e-08
AF260243-1|AAF97549.1| 338|Caenorhabditis elegans stearoyl-CoA ... 54 1e-07
AF022972-8|AAC48239.1| 338|Caenorhabditis elegans Fatty acid de... 54 1e-07
U28971-3|AAK68670.1| 319|Caenorhabditis elegans Hypothetical pr... 32 0.50
AF077542-8|AAC26300.2| 342|Caenorhabditis elegans Serpentine re... 30 2.0
Z75547-6|CAA99903.1| 377|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL110479-18|CAB54365.1| 484|Caenorhabditis elegans Hypothetical... 28 6.2
Z81459-1|CAB03827.3| 731|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z79604-6|CAB97241.2| 731|Caenorhabditis elegans Hypothetical pr... 28 8.2
>Z82073-6|CAB04924.1| 333|Caenorhabditis elegans Hypothetical
protein W06D12.3 protein.
Length = 333
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/60 (45%), Positives = 36/60 (60%)
Frame = +1
Query: 37 GEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASTNIIEKRALRTG 216
GEG HNYHH FP DYR E + ++N T IDF A +G YD KT +I+++ + G
Sbjct: 262 GEGGHNYHHTFPQDYRTSEHAE-FLNWTRVLIDFGASIGMVYDRKTTPEEVIQRQCKKFG 320
>AF260242-1|AAF97548.1| 333|Caenorhabditis elegans palmitoyl-CoA
fatty acid desaturaseFAT-5 protein.
Length = 333
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/60 (45%), Positives = 36/60 (60%)
Frame = +1
Query: 37 GEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASTNIIEKRALRTG 216
GEG HNYHH FP DYR E + ++N T IDF A +G YD KT +I+++ + G
Sbjct: 262 GEGGHNYHHTFPQDYRTSEHAE-FLNWTRVLIDFGASIGMVYDRKTTPEEVIQRQCKKFG 320
>Z95123-2|CAB08356.1| 339|Caenorhabditis elegans Hypothetical
protein VZK822L.1 protein.
Length = 339
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/60 (46%), Positives = 33/60 (55%)
Frame = +1
Query: 37 GEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASTNIIEKRALRTG 216
GEG HN+HH FP DYR E +Y N T ID A +G YD KTA II ++ G
Sbjct: 271 GEGGHNFHHTFPQDYRTSEYSLKY-NWTRVLIDTAAALGLVYDRKTACDEIIGRQVSNHG 329
>AF260244-1|AAF97550.1| 339|Caenorhabditis elegans stearoyl-CoA
desaturase FAT-6 protein.
Length = 339
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/60 (46%), Positives = 33/60 (55%)
Frame = +1
Query: 37 GEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASTNIIEKRALRTG 216
GEG HN+HH FP DYR E +Y N T ID A +G YD KTA II ++ G
Sbjct: 271 GEGGHNFHHTFPQDYRTSEYSLKY-NWTRVLIDTAAALGLVYDRKTACDEIIGRQVSNHG 329
>AF260243-1|AAF97549.1| 338|Caenorhabditis elegans stearoyl-CoA
desaturase FAT-7 protein.
Length = 338
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/73 (42%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +1
Query: 10 SGMANAFT----FGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTA 177
S + N FT GEG HN+HH FP DYRA E Y N T ID A +G YD KT
Sbjct: 257 SAVENVFTTVVAVGEGGHNFHHTFPQDYRASEYSLIY-NWTRVLIDTAAVLGLVYDRKTI 315
Query: 178 STNIIEKRALRTG 216
+ I ++ G
Sbjct: 316 ADEFISRQVANHG 328
>AF022972-8|AAC48239.1| 338|Caenorhabditis elegans Fatty acid
desaturase protein 7 protein.
Length = 338
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/73 (42%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +1
Query: 10 SGMANAFT----FGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTA 177
S + N FT GEG HN+HH FP DYRA E Y N T ID A +G YD KT
Sbjct: 257 SAVENVFTTVVAVGEGGHNFHHTFPQDYRASEYSLIY-NWTRVLIDTAAVLGLVYDRKTI 315
Query: 178 STNIIEKRALRTG 216
+ I ++ G
Sbjct: 316 ADEFISRQVANHG 328
>U28971-3|AAK68670.1| 319|Caenorhabditis elegans Hypothetical
protein B0244.7 protein.
Length = 319
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 341 YNNSYLLK*LFLIFAGNFCIGFYCINLNLYIFLLVLSQILKLI-IGYKRNITLSP*AVKF 517
YN LL+ + IF C+ F+ + LN+YIF +++ + K+ K+ I + AV
Sbjct: 40 YNIEMLLR--WAIFIIPCCMSFFALFLNIYIFYVLIPNLRKMNGRSKKKYIFILSRAVSA 97
Query: 518 PSFVTVILLSKAFVYFIEYEF 580
+ I L ++ + F
Sbjct: 98 SMSILAIFLLPVIIFLTHFNF 118
>AF077542-8|AAC26300.2| 342|Caenorhabditis elegans Serpentine
receptor, class z protein64 protein.
Length = 342
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Frame = +2
Query: 377 IFAGNFCIGFYCINLNLYIFLLVLSQILKLIIGY----KRNITLSP*AV-KFPSFVTVIL 541
+FA FC+ +N + F L++S I++ ++ + ++ IT++ + K +++ VIL
Sbjct: 111 LFAYEFCLLLLRVNNAVLDFFLIISPIVRFLVYFFPSTEKPITVANTHIYKILAYLYVIL 170
Query: 542 LSKAFVYFI 568
+ K F +F+
Sbjct: 171 IIKNFFFFL 179
>Z75547-6|CAA99903.1| 377|Caenorhabditis elegans Hypothetical
protein R11D1.5 protein.
Length = 377
Score = 28.3 bits (60), Expect = 6.2
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +2
Query: 290 FDDFCKVIQKQASGISYYNNSYLLK*LFLIFAGNFCIGFYCINLNLYIFLLVLSQILKLI 469
F FCK +Q+ + IS N+YL+ L +I+ IG Y L I++ V +IL I
Sbjct: 6 FSLFCKSLQETCTFISLILNAYLI--LLIIYKSPKKIGNY---KYLMIYICVF-EILYTI 59
Query: 470 IGYKRNITLSP*AVKFPSFVTVILLSKAFVYFIEY-EFLNAI 592
+G + P + S V VI+ K V+ +FLN++
Sbjct: 60 LG----LITKPYVHSYTSRVIVIVDVKNSVFSRSVNKFLNSL 97
>AL110479-18|CAB54365.1| 484|Caenorhabditis elegans Hypothetical
protein Y105C5B.19 protein.
Length = 484
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 ATQSGMANAFTFGEG-FHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTA 177
A++ GM F ++Y P D + E + R +D++ W+ +A +T
Sbjct: 190 ASKHGMWLPIGFAASELYDYAKGEPLDRKTCEKNLEKLIKNDRDVDYYEWLNFAKRCRTQ 249
Query: 178 STNIIEKRAL 207
+ N++E+ AL
Sbjct: 250 NQNLMEEMAL 259
>Z81459-1|CAB03827.3| 731|Caenorhabditis elegans Hypothetical
protein C03H12.1 protein.
Length = 731
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 204 TKNRGWDLQTTKWNELKSLQKASLRNITFLMTFAKLFKNRLAE 332
T +GW ++ + +K Q+A+++N+ FL + +LAE
Sbjct: 331 THYKGWVMENVHKDLVKFSQEAAMKNVEFLNLGRRFHSTQLAE 373
>Z79604-6|CAB97241.2| 731|Caenorhabditis elegans Hypothetical
protein C03H12.1 protein.
Length = 731
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 204 TKNRGWDLQTTKWNELKSLQKASLRNITFLMTFAKLFKNRLAE 332
T +GW ++ + +K Q+A+++N+ FL + +LAE
Sbjct: 331 THYKGWVMENVHKDLVKFSQEAAMKNVEFLNLGRRFHSTQLAE 373
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,012,149
Number of Sequences: 27780
Number of extensions: 332447
Number of successful extensions: 771
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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