Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0380.Seq
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15850.1 68416.m02005 fatty acid desaturase family protein si... 34 0.088
At1g06090.1 68414.m00638 fatty acid desaturase family protein si... 34 0.088
At1g06360.1 68414.m00672 fatty acid desaturase family protein si... 34 0.12
At1g06350.1 68414.m00671 fatty acid desaturase family protein si... 34 0.12
At1g06120.1 68414.m00641 fatty acid desaturase family protein si... 34 0.12
At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to ... 33 0.20
At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to ... 32 0.47
At3g15870.1 68416.m02007 fatty acid desaturase family protein si... 31 0.62
At1g06100.1 68414.m00639 fatty acid desaturase family protein si... 31 1.1
At1g53470.1 68414.m06061 mechanosensitive ion channel domain-con... 29 2.5
At1g26650.1 68414.m03245 expressed protein 29 2.5
At4g04930.1 68417.m00717 fatty acid desaturase family protein si... 28 7.7
>At3g15850.1 68416.m02005 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 371
Score = 34.3 bits (75), Expect = 0.088
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 25 AFTFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTAS 180
A FGEG+HN HH F + R L +++T + F +G A D+K S
Sbjct: 309 ALAFGEGWHNNHHAFEFSAR-HGLEWWQLDMTWYVVKFLQAIGLATDVKLPS 359
>At1g06090.1 68414.m00638 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]
Length = 299
Score = 34.3 bits (75), Expect = 0.088
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +1
Query: 28 FTFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLK 171
FT GE +HN HH F R L ++LT I FF +G A D+K
Sbjct: 239 FTMGESWHNNHHAFEASAR-HGLEWYQVDLTWYLICFFQALGLATDVK 285
>At1g06360.1 68414.m00672 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = +1
Query: 28 FTFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASTNIIEKRAL 207
FT GE +HN HH F R L I++T I F +G A D+K S +K AL
Sbjct: 239 FTMGESWHNNHHAFESSAR-QGLEWWQIDITWYLIRLFEVLGLATDVKLPSEIQKQKLAL 297
>At1g06350.1 68414.m00671 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 300
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = +1
Query: 28 FTFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASTNIIEKRAL 207
FT GE +HN HH F R L I++T I F +G A D+K S +K AL
Sbjct: 240 FTMGESWHNNHHAFESSAR-QGLEWWQIDITWYLIRLFEVLGIATDVKLPSELQKQKMAL 298
>At1g06120.1 68414.m00641 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]; supported
by cDNA:gi_12083275_gb_AF332434.1_AF332434
Length = 299
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +1
Query: 28 FTFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLK 171
FT GE +HN HH F R L ++LT I FF +G A D+K
Sbjct: 239 FTMGESWHNNHHAFEASAR-HGLEWYQVDLTWYLIWFFQVLGLATDVK 285
>At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to
delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from
[Arabidopsis thaliana]
Length = 307
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 22 NAFTFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLK 171
+ F+FGE +HN HH F R L I+++ + FF +G A D+K
Sbjct: 245 SVFSFGESWHNNHHAFESSAR-QGLEWWQIDISWYIVRFFEIIGLATDVK 293
>At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to
delta 9 acyl-lipid desaturase (ADS1) GB:BAA25180
GI:2970034 from [Arabidopsis thaliana]
Length = 305
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 22 NAFTFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASTNIIEKR 201
+ F+FGE +HN HH F R L I+++ + F +G A D+K S + +
Sbjct: 243 SVFSFGESWHNNHHAFESSAR-QGLEWWQIDISWYIVRFLEIIGLATDVKLPSESQRRRM 301
Query: 202 AL 207
A+
Sbjct: 302 AM 303
>At3g15870.1 68416.m02007 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 292
Score = 31.5 bits (68), Expect = 0.62
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1
Query: 31 TFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASTNIIEKRAL 207
T GEG+HN HH F + R L +++T I F +G A ++K + ++ +AL
Sbjct: 234 TLGEGWHNNHHAFEFSAR-HGLEWWQLDITWCLIRFLEAIGLATNVKLPTETQMKGKAL 291
>At1g06100.1 68414.m00639 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 31 TFGEGFHNYHHVFPWDYRADELGDRYINLTTRFIDFFAWMGWAYDLKTASTNIIEKRALR 210
T GE +HN HH F R L +++T I FF +G A ++K + K A+R
Sbjct: 240 TMGESWHNNHHAFETSAR-HGLEWYQLDITWYLIWFFQALGLATNVKLPTDAQKRKMAIR 298
>At1g53470.1 68414.m06061 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 881
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Frame = +2
Query: 425 LYIFLLVLSQILKLIIGYKRNITLSP*AV-KFPSFVTVIL--------LSKAFVYFIEYE 577
+++ L++ S I L+I Y R TL A+ K+ V V++ + K FVYF+E
Sbjct: 264 IFLILIIASLICSLVIPYLRGKTLWDLALWKWEVMVLVLICGRLVSSWIVKLFVYFVESN 323
Query: 578 FL 583
FL
Sbjct: 324 FL 325
>At1g26650.1 68414.m03245 expressed protein
Length = 335
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 506 AVKFPSFVTVILLSK-AFVYFIEYEFLNAI*AFLSYIKIISPYW 634
A+ FP F+TV LLSK A VY ++ + + ++ I+ W
Sbjct: 108 AMCFPVFITVSLLSKAAVVYSVDCSYSREVVDISKFLVILQKIW 151
>At4g04930.1 68417.m00717 fatty acid desaturase family protein
similar to D. melanogaster Des-1 protein, GenBank
accession number X94180; contains Pfam profile PF00487
Fatty acid desaturase domain
Length = 332
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 13 GMANAFTFGEGFHNYHHVFP 72
G N T+ G+HN HH FP
Sbjct: 259 GPLNLLTWSVGYHNEHHDFP 278
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,813,596
Number of Sequences: 28952
Number of extensions: 296981
Number of successful extensions: 646
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -