Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0379.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    30   0.25 
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ...    27   2.3  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.3  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    27   3.1  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    26   5.4  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   7.1  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.4  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   9.4  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   9.4  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 108 PRISPLTSQYEYXHLSLLIITSEFCKPTK*NRDHIL 215
           PR+    S+Y   HL  LI   EFC+  K + D IL
Sbjct: 425 PRLEQYASEYMANHLEHLIDDPEFCELVKESADRIL 460


>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 285 FTLNKLE-CSKRLKMLLEYFVHGIIEYDLGSILLVCR 178
           F + KL+ C+ R++  LEY        DL SI  +CR
Sbjct: 189 FAIQKLQSCAMRVREQLEYNPTTFASRDLSSISYICR 225


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 558 LIPITRPRKSPVSLSFVTTSPCREWVICA 644
           +IPI +  KS +SL F+T SPC  + IC+
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICS 70


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
            Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 450  LFNRNNFSIRYWSWNYRGCCTRLALQLFLVKIFKVVLIPITRPRK 584
            + NR+ F   Y  W +      +    F V+I+K +   +T P+K
Sbjct: 959  VINRDVFKHTYIGWEWGVVAVAVMFYFFYVEIWKSIRRSLTNPQK 1003


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 197 EPRSYSIIPCTKYSSSIFSRFEHSNLFKVKL 289
           +P    I  C KY S+ +S   HS L  ++L
Sbjct: 231 DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 175 SEVMINRDKWXYSYCDVRGEI 113
           +E +++  K+  SYC VRG I
Sbjct: 270 TETILDSSKYCVSYCQVRGSI 290


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 426 AAHKCNYELFNRNNFSIRYWSWNYR 500
           AA KC +E      FSI + S+N++
Sbjct: 73  AASKCEFEKIWSTTFSISFLSFNFK 97


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 54   IDENTFGKCFR*SSSCDDPRISPLTSQYEYXHLSLLIITSE 176
            I E+T  +  R S++   P   PL+ +YEY    + ++  E
Sbjct: 969  IGESTVREALRFSAALRQPASVPLSEKYEYVESVIKLLEME 1009


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = +2

Query: 161 NHYLGVLQTN-KIEPRSYSIIPCTKYSS--SIFSRFE---HSNLFKVKLSAHLDTHRRAS 322
           N  L V+Q N +  P  + I    + SS  +I   FE   H +  + +L+ HLD +   S
Sbjct: 239 NGSLSVVQNNARNNPVDFYIPSSFEESSFQTIPEDFEPQVHDHENQTQLNHHLDNNSSIS 298

Query: 323 RHXPDIEPA 349
            H P +E A
Sbjct: 299 SHNPSLETA 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,909
Number of Sequences: 5004
Number of extensions: 48563
Number of successful extensions: 117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)