Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0379.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   5e-10
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   6e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   6e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   7e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.001
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.004
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.021
SB_36351| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)           31   0.81 
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)                   30   1.9  
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)                    28   5.7  
SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)                   28   5.7  
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.5  
SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   9.9  
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 30/37 (81%), Positives = 31/37 (83%)
 Frame = -2

Query: 113 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
           SWI  RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = -2

Query: 98  RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
           RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = -2

Query: 98  RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
           RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = -2

Query: 98  RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
           RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 40


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = -2

Query: 98  RRTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
           RRT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVL 42


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 26/31 (83%), Positives = 27/31 (87%)
 Frame = -2

Query: 95  RTSAKAFAKGVFINQERKLEVRRRLDTALVL 3
           RT+AKAFAK VFINQERKLE RRR DT LVL
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDTVLVL 59


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = -2

Query: 95 RTSAKAFAKGVFINQERKLEVRRRLDT 15
          RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2  RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/33 (66%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
 Frame = -2

Query: 98  RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
           R+T+  ++ AK VFINQERKLE RRR DT LVL
Sbjct: 8   RKTNYCESIAKNVFINQERKLEDRRRSDTVLVL 40



 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 120 VKFLDRRKTNFSESICQRCFHQSRTKV 40
           VKFLD RKTN+ ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = -1

Query: 120 VKFLDRRKTNFSESICQRCFHQSRTKV 40
           VKFLD RKTN+ ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -2

Query: 98  RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
           R+T+  ++  +  FINQERKLE RRR DT LVL
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = -1

Query: 120 VKFLDRRKTNFSESICQRCFHQSRTKV 40
           VKFLD RKTN+ ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -2

Query: 98  RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
           R+T+  ++  +  FINQERKLE RRR DT LVL
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = -2

Query: 98  RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
           R+T+  ++  + VFINQERKLE RRR DT LVL
Sbjct: 8   RKTNYCESICQDVFINQERKLEDRRRSDTVLVL 40



 Score = 35.5 bits (78), Expect = 0.038
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -1

Query: 120 VKFLDRRKTNFSESICQRCFHQSRTKV 40
           VKFLD RKTN+ ESICQ  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -2

Query: 98  RRTS-AKAFAKGVFINQERKLEVRRRLDTALVL 3
           R+T+  ++  +  FINQERKLE RRR DT LVL
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVL 40



 Score = 31.5 bits (68), Expect = 0.61
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 117 KFLDRRKTNFSESICQRCFHQSRTKV 40
           + L  RKTN+ ESICQ CF     K+
Sbjct: 3   EILGFRKTNYCESICQECFINQERKL 28


>SB_36351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -1

Query: 345 GSISGXWRDALR*VSRWADNFTLNKLECSKRLKMLLEYFVHGIIEYDLGSILLV 184
           G+I G W+  +  VS++ADN +L KL  S  LK          + Y+ GS  LV
Sbjct: 104 GNIFGGWKTLMDAVSKFADNMSLTKLVVS--LKDTDPDDAFSSVPYEKGSCFLV 155


>SB_7564| Best HMM Match : Peptidase_M1 (HMM E-Value=6.8e-08)
          Length = 457

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -1

Query: 345 GSISGXWRDALR*VSRWADNFTLNKLECSKRLKMLLEYFVHGIIEYDLGSILLV 184
           G+I G W+  +  VS++ADN +L KL  S  LK          + Y+ GS  LV
Sbjct: 265 GNIFGGWKTLMDAVSKFADNMSLTKLVVS--LKDTDPDDAFSSVPYEKGSCFLV 316


>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
          Length = 444

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 357 LKNAGSISGXWRDALR*VSRWADNFTLNKLECSKR 253
           L   G+ SG  RDALR    W D+   + L+C +R
Sbjct: 170 LSPTGTTSGVARDALRPTRDWRDSPLSSSLQCQRR 204


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +2

Query: 182 QTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHL 301
           + + ++   Y+ +    +S   F RFEH+N  ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764


>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
          Length = 575

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 206 SYSIIPCTKYSSSIFSRFEH 265
           +Y  IPCT Y+ +++SRF H
Sbjct: 127 TYRGIPCTNYTENLWSRFWH 146


>SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)
          Length = 605

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 206 SYSIIPCTKYSSSIFSRFEH 265
           +Y  IPCT Y+ +++SRF H
Sbjct: 58  TYRGIPCTNYTENLWSRFWH 77


>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1704

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 622  HGEVVTKDNDTGLLRGLVIGMSTTLNILTRNN 527
            +  V+T+DN  G+ R    G++   N+LTR+N
Sbjct: 1649 NSNVLTRDNSHGITRDNSHGITRDNNVLTRDN 1680


>SB_54812| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 392

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 339 LNRRFLERR---LTDDMLRKRVSITADACTDSAAHKCNYELFNRNNFSI 476
           L  R+L+R    + +D L K+     D   DS    C++  FNR++  I
Sbjct: 341 LPNRYLQRMHKSVLNDRLAKKTGKRPDTEVDSKRSNCSHATFNRDSLKI 389


>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2496

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 471  SIRYWSWNYRGCCTRLALQLFLVKI 545
            S+R W + +R C + LA QLF V +
Sbjct: 1135 SLRLWGYKWRKCDSTLAKQLFSVLV 1159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,109,602
Number of Sequences: 59808
Number of extensions: 379023
Number of successful extensions: 929
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)