Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0379.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    28   6.1  
At2g43930.1 68415.m05460 protein kinase family protein contains ...    27   8.1  
At1g23300.1 68414.m02914 MATE efflux family protein similar to r...    27   8.1  

>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 564 PITRPRKSPVSLSFVTTSPCREWVICAP 647
           PI+ P KSP + S  TTSP +   + +P
Sbjct: 24  PISSPTKSPTTPSAPTTSPTKSPAVTSP 51


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 197 EPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHLDTHR 313
           EP    ++ C K S    S FEH  LFK  +    + H+
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


>At1g23300.1 68414.m02914 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 515

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 592 TGLLRGLVIGMSTTLNILTRNNWR--ASLVQ 506
           TG+L G V+  S  L I+ R NW+  ASL +
Sbjct: 451 TGMLTGTVVQTSVLLFIIYRTNWKKEASLAE 481


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,097,716
Number of Sequences: 28952
Number of extensions: 251135
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)