Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0378.Seq
         (758 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n...    60   4e-08
UniRef50_Q6QI94 Cluster: LRRG00114; n=1; Rattus norvegicus|Rep: ...    48   3e-04
UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;...    40   0.067
UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY0513...    39   0.12 
UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3; ...    39   0.12 
UniRef50_A7SUZ6 Cluster: Predicted protein; n=2; Eukaryota|Rep: ...    38   0.27 
UniRef50_UPI0000DA1C3D Cluster: PREDICTED: similar to CCR4-NOT t...    33   5.8  
UniRef50_A4S1P1 Cluster: Predicted protein; n=1; Ostreococcus lu...    33   5.8  
UniRef50_Q4YNW0 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  
UniRef50_Q8WXI7 Cluster: Mucin-16; n=23; cellular organisms|Rep:...    33   7.7  

>UniRef50_UPI0000ECD483 Cluster: UPI0000ECD483 related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECD483 UniRef100 entry -
           Gallus gallus
          Length = 103

 Score = 60.5 bits (140), Expect = 4e-08
 Identities = 31/41 (75%), Positives = 33/41 (80%)
 Frame = +3

Query: 510 TRLALQLFLVKIFKVYSFRLRGLVRVPYRYFSSLPPRAGSG 632
           TRLALQ  LVK FKV SF+L+GL RV Y YFSSLPPR GSG
Sbjct: 63  TRLALQWILVKGFKVDSFQLQGLERVLYCYFSSLPPRVGSG 103


>UniRef50_Q6QI94 Cluster: LRRG00114; n=1; Rattus norvegicus|Rep:
           LRRG00114 - Rattus norvegicus (Rat)
          Length = 223

 Score = 48.0 bits (109), Expect = 3e-04
 Identities = 22/23 (95%), Positives = 22/23 (95%)
 Frame = +3

Query: 645 LLPSLDVVAVSQAPSPESNPDSP 713
           LLPSLDVVAVSQAPSPE NPDSP
Sbjct: 167 LLPSLDVVAVSQAPSPELNPDSP 189


>UniRef50_UPI0000F2EBCE Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 493

 Score = 39.9 bits (89), Expect = 0.067
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +2

Query: 575 PRKSPVSLFFVTTSPCREW 631
           PRKSPV LFFVTTSP REW
Sbjct: 24  PRKSPVLLFFVTTSPGREW 42


>UniRef50_Q7RED5 Cluster: Putative uncharacterized protein PY05130;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05130 - Plasmodium yoelii yoelii
          Length = 402

 Score = 39.1 bits (87), Expect = 0.12
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +3

Query: 666 VAVSQAPSPESNPDSPLPVTTMVVAETTIES 758
           +A+SQAPSPESN +SPLPV  M+     I+S
Sbjct: 372 LAISQAPSPESNSNSPLPVKAMLGQYPNIKS 402


>UniRef50_A2GSA9 Cluster: Putative uncharacterized protein; n=3;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 76

 Score = 39.1 bits (87), Expect = 0.12
 Identities = 25/69 (36%), Positives = 35/69 (50%)
 Frame = +3

Query: 486 SWNYRGCCTRLALQLFLVKIFKVYSFRLRGLVRVPYRYFSSLPPRAGSG*FARLLPSLDV 665
           SWNYR C  +    L    +       +    R  + + S  PP+  SG  +RLL  +D+
Sbjct: 7   SWNYRSCWHQTGPLLGFGTVEN--RTPIHSTKRHQWNW-SLPPPKVSSGKVSRLLLPVDI 63

Query: 666 VAVSQAPSP 692
           VA+SQAPSP
Sbjct: 64  VAISQAPSP 72


>UniRef50_A7SUZ6 Cluster: Predicted protein; n=2; Eukaryota|Rep:
          Predicted protein - Nematostella vectensis
          Length = 79

 Score = 37.9 bits (84), Expect = 0.27
 Identities = 17/21 (80%), Positives = 17/21 (80%)
 Frame = -3

Query: 63 FHQSRTKVRGSKAIRYRPSSN 1
          F   RTKVRGSK IRYRPSSN
Sbjct: 6  FRCQRTKVRGSKTIRYRPSSN 26


>UniRef50_UPI0000DA1C3D Cluster: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 3; n=1; Rattus
           norvegicus|Rep: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 3 - Rattus norvegicus
          Length = 750

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 603 SSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLP 719
           +++P   G G  A   P L + A S  PSPE  PD+PLP
Sbjct: 607 AAIPTGHGRGRLAPHAPPLXLRAHSAVPSPEPLPDTPLP 645


>UniRef50_A4S1P1 Cluster: Predicted protein; n=1; Ostreococcus
          lucimarinus CCE9901|Rep: Predicted protein -
          Ostreococcus lucimarinus CCE9901
          Length = 72

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 15/21 (71%), Positives = 15/21 (71%)
 Frame = -3

Query: 63 FHQSRTKVRGSKAIRYRPSSN 1
          FH  RTKV GSK IRY PS N
Sbjct: 6  FHCQRTKVGGSKMIRYHPSLN 26


>UniRef50_Q4YNW0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 575

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = +2

Query: 65  HLWQMLSLKFVLRRSKNFTSNVAIRIXPVIPINHYLGVLKTNKIEP-RSYSIIPCTKYSS 241
           H+++ +  K++   + N  +N  I+I     +NH+L ++ +NK+   + Y +I    + S
Sbjct: 102 HIFKTIEEKYICSTNNNNKANEQIQIEEKSVLNHFLYLMDSNKLNSIKEYQMI-YIDFDS 160

Query: 242 SIFSRFEHSNLFKVKLSAHLD 304
            IF   +  N+  +  S H++
Sbjct: 161 CIFDTIQKMNIRNI--SEHIN 179


>UniRef50_Q8WXI7 Cluster: Mucin-16; n=23; cellular organisms|Rep:
            Mucin-16 - Homo sapiens (Human)
          Length = 22152

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 597  YFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVA 740
            + ++ P    S  F+ + PS+   +   + SPES P SPLPVT ++ +
Sbjct: 5621 WMTTPPVEETSSGFSLMSPSMTSPSPVSSTSPESIPSSPLPVTALLTS 5668


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,254,178
Number of Sequences: 1657284
Number of extensions: 13723889
Number of successful extensions: 35630
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35613
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)