Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0378.Seq
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   4.4  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   4.4  
At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containi...    28   5.9  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    28   7.7  

>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 642 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 743
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 651 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 758
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +3

Query: 396 SITADACTDSAAHKCNYELFNRNNFSIR-YWSWNYRGCCTRLALQLFLVK-IFKVYSFRL 569
           +I + A T    ++ + +L   N+   + YW+     CCTRL    +  + IF   +F  
Sbjct: 11  AIASQALTFPQLNQIHAQLIVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFDSVTFPN 70

Query: 570 RGLVRVPYRYFSSL 611
             +V   ++YFS +
Sbjct: 71  VFVVNSMFKYFSKM 84


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 514 DLPSNCSSLKYLKCTHSDYE 573
           DL +NCSSL+YL  +H+  E
Sbjct: 167 DLFNNCSSLRYLSLSHNHLE 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,094,104
Number of Sequences: 28952
Number of extensions: 300336
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)