Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0377.Seq
         (605 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1; ...    71   2e-11
UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp. ...    46   7e-04
UniRef50_UPI00015547F1 Cluster: PREDICTED: similar to IA-1; n=1;...    36   0.74 
UniRef50_A0D095 Cluster: Chromosome undetermined scaffold_33, wh...    35   1.3  
UniRef50_Q1IW01 Cluster: Putative uncharacterized protein; n=1; ...    34   2.3  

>UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 99

 Score = 70.9 bits (166), Expect = 2e-11
 Identities = 32/33 (96%), Positives = 32/33 (96%)
 Frame = +2

Query: 506 GKCARNPYLFIFLNTFKYVSAHETITLINASTI 604
           GKCARNPYLFIFLNTFKYVSAHETITLINAS I
Sbjct: 28  GKCARNPYLFIFLNTFKYVSAHETITLINASII 60


>UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp.
           SS|Rep: LacZ alpha peptide - Beggiatoa sp. SS
          Length = 73

 Score = 46.0 bits (104), Expect = 7e-04
 Identities = 22/29 (75%), Positives = 22/29 (75%)
 Frame = -2

Query: 361 GFPRQAXXXXXXXGFRFSALRHLDPKKLD 275
           GFPRQA       GFRFSALRHLDPKKLD
Sbjct: 45  GFPRQALNRGLPLGFRFSALRHLDPKKLD 73



 Score = 40.3 bits (90), Expect = 0.035
 Identities = 21/36 (58%), Positives = 22/36 (61%)
 Frame = -1

Query: 491 DAPCSCALSAAGVVVTRSVIRYTCQRPSARSFRFLP 384
           DAPCS ALSAAGVVVTRSV        +   F F P
Sbjct: 2   DAPCSGALSAAGVVVTRSVTATLASALAPAPFAFFP 37


>UniRef50_UPI00015547F1 Cluster: PREDICTED: similar to IA-1; n=1;
           Ornithorhynchus anatinus|Rep: PREDICTED: similar to IA-1
           - Ornithorhynchus anatinus
          Length = 225

 Score = 35.9 bits (79), Expect = 0.74
 Identities = 26/87 (29%), Positives = 36/87 (41%)
 Frame = -1

Query: 572 HERIHI*MYLEK*TNRGSAHISRKVPPDAPCSCALSAAGVVVTRSVIRYTCQRPSARSFR 393
           H R     YL K  + G+        P  P +  L+  G        R  C R   +SF+
Sbjct: 126 HRRFRRPAYLRK--HLGTHEEGSVRAPMPPAALGLALPGPPAAEPGERRFCFRFPPKSFK 183

Query: 392 FLPFLSRHVRRLSPSSSKXGAXVRVPI 312
             PFLSRHV    PS  +    ++VP+
Sbjct: 184 SSPFLSRHVDSCHPSDGRRLLLLQVPM 210


>UniRef50_A0D095 Cluster: Chromosome undetermined scaffold_33, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_33,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1173

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 158 LIAVYSFDL*GILPISAYWLKNELI*QKFNANFNKILTLTICHSPFR 18
           L  +++F L G L    +WLKN+    KF++ F ++L L +  + FR
Sbjct: 662 LYLIFNFSLQGALSYIDFWLKNQHFDDKFSSTFTQLLLLALGVTVFR 708


>UniRef50_Q1IW01 Cluster: Putative uncharacterized protein; n=1;
           Deinococcus geothermalis DSM 11300|Rep: Putative
           uncharacterized protein - Deinococcus geothermalis
           (strain DSM 11300)
          Length = 171

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +3

Query: 162 ECCSSLEQESTIKERGLQRQRAKNRLSGRWPLREPSP*SSFLGSRCRKALNRNPNXSPPF 341
           E  SS    S +++R +QR+       G  PL +PS  S  LG  CR+A   + +   P+
Sbjct: 32  EVLSSHSHSSGLQDRPVQRRSESPSRDGLLPLNKPSRESRLLGRACRQAHVMSDDSKKPY 91

Query: 342 RA*RGKPA 365
                 PA
Sbjct: 92  DPANTAPA 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,853,697
Number of Sequences: 1657284
Number of extensions: 10229047
Number of successful extensions: 21385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21382
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)