Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0377.Seq
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    28   1.2  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   1.2  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    27   2.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   4.9  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   4.9  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   8.6  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    25   8.6  

>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 120  QNPL*IKRIDRNKVECCSSLEQESTIKERGLQRQRAKNRLSGRWPLREP 266
            + PL ++  D+NK E   SLE E  +   G     A N++S   P   P
Sbjct: 975  KQPLVVQSTDKNKKEPQESLEDE-ILSAEGFSEVEAANKISRFEPFSSP 1022


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 244 PDRRFFAL*RWSPRSLIVDSCSK 176
           PD +FF +  W P  L + SC K
Sbjct: 220 PDAKFFGIFDWDPHGLCIYSCFK 242


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +1

Query: 205 VDSNVKGRKTVYQGDGPYVNHHPNQVF----WGRGAVKH*IGT 321
           V+ + KG   V  GDG Y N H  QV      G G  K  +GT
Sbjct: 44  VEPSAKGAHLVVGGDGRYFNFHAIQVIAAIAAGNGVEKIIVGT 86


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 80  VKSAHFLTNRPKSAKSLINQKNRP 151
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 160 LSVVPVWNKSPLLKNVDSNVKGRKTVYQGDGPY 258
           +++ PV N +P+ K VDS  + R   +  +G Y
Sbjct: 1   MTLFPVLNNTPVGKQVDSIYESRLDQFLSEGQY 33


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 211 SPRSLIVDSCSKLEQHSTLLRSILLI 134
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 449 PPHPPRLMRSYRARQVALFGKCA---RNPYLFIFLNTFKYVSAHETITLINA 595
           PPHPP++M    +  +A  G  A   ++  + I + + + +SAH  +  I A
Sbjct: 329 PPHPPKIMPDDISASLANKGATAVTIKDTIMVINIQSNRKISAHGFLASIFA 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,707
Number of Sequences: 5004
Number of extensions: 42300
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)